ChiCMaxima: a pipeline for detecting and analysing chromatin loops in promoter Capture Hi-C data. Published tool.
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Apr 10, 2026 - R
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capture-hic
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Graph neural networks (PyTorch Geometric) predicting regulatory element activation from chromatin interaction networks — GAT, TransformerConv and WeightedGCN benchmarked on PCHi-C data from our Nature Communications study.
machine-learning deep-learning computational-biology pytorch gene-regulation chromatin epigenomics graph-neural-networks pytorch-geometric capture-hic
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Apr 21, 2026 - Python
End-to-end Snakemake pipeline for PCHi-C and Hi-C: QC, significant interaction detection, .hic generation, insulation scores, and TAD calling.
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Nov 27, 2025 - R
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