3d-genomics

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Blazing fast toolkit to work with .hic and .cool files

bioinformatics cxx genomics conversion hi-c cooler cli-application hic cxx17 cxx-library hictk 3d-genomics

Python bindings for hictk: read and write .cool and .hic files directly from Python

bioinformatics genomics python3 bindings hi-c cooler hic hictk 3d-genomics

R bindings for hictk: read .cool and .hic files directly from R

bioinformatics r genomics bindings hi-c cooler hic hictk 3d-genomics

ChiCMaxima: a pipeline for detecting and analysing chromatin loops in promoter Capture Hi-C data. Published tool.

bioinformatics r genomics chromatin chromatin-loops 3d-genomics capture-hic

End-to-end Snakemake pipeline for PCHi-C and Hi-C: QC, significant interaction detection, .hic generation, insulation scores, and TAD calling.

bioinformatics snakemake pipeline chromatin epigenomics 3d-genomics capture-hic

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