Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.
Scripts and outputs for the paper "Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM"
A quantitative 16S rRNA amplicon sequencing pipeline leveraging the QIIME 2 framework, DADA2 ASV inference, and ANCOM-BC to resolve complex microbial ecologies and pinpoint taxonomic differential abundance.
QIIME 2-based pipeline for tracking microbial community succession, taxonomic profiling, and calculating chronological ecological diversity metrics.
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