Amplicon sequence processing workflow using QIIME 2 and Snakemake
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Updated
Jun 23, 2026 - Python
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amplicon-sequence-variants
Here are 4 public repositories matching this topic...
A workflow for processing CCS reads of AMF to ASVs using DADA2
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Oct 18, 2022 - R
Bioinformatics tool for reconstructing amplicon sequence variants from long-read amplicons
bioinformatics microbiome nanopore-sequencing amplicon-sequence-variants long-read-amplicon-sequencing full-lenght-16s-rrna-gene
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May 4, 2026
A quantitative 16S rRNA amplicon sequencing pipeline leveraging the QIIME 2 framework, DADA2 ASV inference, and ANCOM-BC to resolve complex microbial ecologies and pinpoint taxonomic differential abundance.
computational-biology metagenomics phylogenetics microbiome microbial-ecology dada2 amplicon-sequencing qiime2 16s-rrna amplicon-sequence-variants ancom-bc unifrac dysbiosis host-microbiome
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Apr 19, 2026 - Python
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