Sound analysis/synthesis tools for music applications

Biopython Jupyter Notebook tutorial to characterize a small genome

Supervised Adversarial Alignment of Single-Cell RNA-seq Data

R tutorial for SIB days 2020 Spatial workshop

A work-in-progress curriculum of videos, articles, and exercises for teaching data science in R (focusing on the tidyverse)

Multi-Omics Factor Analysis

The Los Angeles Times' open-source archive of California coronavirus data

from gene expression counts to sounds in R

Aggregate results from bioinformatics analyses across many samples into a single report.

Materials for a class on reproducible research with R, Rstudio, and GitHub

Repository for the Genome Annotation Workshop at NMNH (June 4-5, 2019)

A nice Rmarkdown template for a CV, courtesy of svmiller's template (http://svmiller.com/blog/2016/03/svm-r-markdown-cv/)

📚 Various bioinformatics tutorials

A(n unofficial) transcript of a lecture given by John Cleese on creativity

Open grants list

Quickly search, compare, and analyze genomic and metagenomic data sets.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

(formerly eelpond) an automated RNA-Seq workflow system

Workshop materials for shotgun metagenomics

This is the post-analysis of fg data mapped to fh chromosome mapped genome. (pop gen parameters)

Transcriptome assembly via digital normalization with khmer and Trinity

🌮 Taco is an experimental command line interface for dahak workflows. https://dahak-metagenomics.github.io/dahak-taco

‘Phylogenetic Aware Parsing Script’ (PAPS for short) is the last of a pipeline of three Perl scripts which allows the user to produce lists of homologous genes (proteins clustered using MCL) based …

Sequencing to the people!

this includes all scripts, analyses, and results of our re-analysis of Zanne et al. 2014 Nature 506: 89-92

Motivating toy example of a reproducible workflow to do cool things with data