GitHub - PapsLab/Phylogenetic_Aware_Parsing_Script: ‘Phylogenetic Aware Parsing Script’ (PAPS for short) is the last of a pipeline of three Perl scripts which allows the user to produce lists of homologous genes (proteins clustered using MCL) based on their taxonomic occupancy; this allows the user to infer the patterns of gene gains and losses across a phylogeny which can be customized by the user.

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
Input		Input
Output		Output
Create_DBs.pl		Create_DBs.pl
Phylogenetic Aware Parsing Script.pl		Phylogenetic Aware Parsing Script.pl
README.docx		README.docx
Tree.txt		Tree.txt

About

‘Phylogenetic Aware Parsing Script’ (PAPS for short) is the last of a pipeline of three Perl scripts which allows the user to produce lists of homologous genes (proteins clustered using MCL) based on their taxonomic occupancy; this allows the user to infer the patterns of gene gains and losses across a phylogeny which can be customized by the user.