Search results

Cannot get example for CIF direct templates to work

bugSomething isn't workingSomething isn't working

Status: Open.

#262 In aqlaboratory/openfold-3;

· astromick71 opened on Jun 15, 2026

[BUG]Possible mismatch in nucleotide PAE frame atom order

bugSomething isn't workingSomething isn't working

questionFurther information is requestedFurther information is requested

scienceDiscussions about scientific aspects of OpenFold3Discussions about scientific aspects of OpenFold3

Status: Open.

#247 In aqlaboratory/openfold-3;

· bluedog-1 opened on Jun 4, 2026

Migrate to torch.compile or torch.export

bugSomething isn't workingSomething isn't working

dependenciesPull requests that update a dependency filePull requests that update a dependency file

Status: Open.

#236 In aqlaboratory/openfold-3;

· sdvillal opened on May 29, 2026

CIF Direct templates have apparent negligible influence on predicted conformations/steering

enhancementNew feature or requestNew feature or request

scienceDiscussions about scientific aspects of OpenFold3Discussions about scientific aspects of OpenFold3

Status: Open.

#235 In aqlaboratory/openfold-3;

· sukritsingh opened on May 28, 2026

[QUESTION] Minimal template influence with single sequence?

enhancementNew feature or requestNew feature or request

scienceDiscussions about scientific aspects of OpenFold3Discussions about scientific aspects of OpenFold3

Status: Open.

#234 In aqlaboratory/openfold-3;

· rostro36 opened on May 28, 2026

Inference OOM from get_token_frame_atoms

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

inferenceRelating to the inference pipelineRelating to the inference pipeline

Status: Open.

#225 In aqlaboratory/openfold-3;

· GMNGeoffrey opened on May 19, 2026

Support covalently bound ligands in inference

enhancementNew feature or requestNew feature or request

Status: Open.

#219 In aqlaboratory/openfold-3;

· gilep opened on May 11, 2026

Request target list for Runs N’ Poses benchmark

enhancementNew feature or requestNew feature or request

Status: Open.

#215 In aqlaboratory/openfold-3;

· yuyangw opened on May 6, 2026

Restoring chunking for batch_size > 1 with optimized kernels

enhancementNew feature or requestNew feature or request

Status: Open.

#206 In aqlaboratory/openfold-3;

· GMNGeoffrey opened on Apr 30, 2026

[QUESTION] msas uncompatible format

bugSomething isn't workingSomething isn't working

questionFurther information is requestedFurther information is requested

Status: Open.

#188 In aqlaboratory/openfold-3;

· belouah opened on Apr 17, 2026

[BUG] prep_cutlass() in _deepspeed_evo_attn breaks DeepSpeed Evoformer attention on AMD/ROCm

bugSomething isn't workingSomething isn't working

inferenceRelating to the inference pipelineRelating to the inference pipeline

Status: Open.

#177 In aqlaboratory/openfold-3;

· dbjoreli opened on Apr 13, 2026

[QUESTION] Length generalization during validation

scienceDiscussions about scientific aspects of OpenFold3Discussions about scientific aspects of OpenFold3

Status: Open.

#173 In aqlaboratory/openfold-3;

· andrewliu2001 opened on Apr 9, 2026