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trajesus/README.md

Hi there 👋, I'm Tiago Jesus

🧠 AI/ML Engineer · Medical Imaging · MONAI Developer

PhD Candidate @ Universidade do Minho · Researcher @ Centro ALGORITMI & ICVS

🏆 BraTS 2024 — 🥇 Task 1 (Adult Glioma Post-Treatment) · 🥉 Task 3
🏆 MICCAI Open Suturing Skills Challenge 2025 — 🥈 Task 2 · 🎖️ Task 3
📚 8+ peer-reviewed publications (Springer · Neurobiology of Aging · Neuroscience)

🧑‍🔬 About Me

  • 🇵🇹 Based in Portugal (Madeira)
  • 👨‍🎓 PhD Candidate in Biomedical Engineering @ Universidade do Minho
  • 🧬 Researcher @ ICVS – School of Medicine (neuroimaging & Alzheimer's) and Centro ALGORITMI (AI/ML)
  • 🤖 Core stack: MONAI · PyTorch · Python · UNet · NIfTI/DICOM
  • 🎯 Open to: AI/ML Engineer · Medical Imaging Researcher · MONAI Developer roles
  • 🔬 Interested in medical 3D printing, medical imaging, image segmentation, and interactive medical education
  • 📚 Researcher Profiles:
    Google Scholar Scopus ORCID CIÊNCIAVITAE

🚀 Highlight Projects

Project Description Result
MRIHemorrhageDetection MONAI-based 2D segmentation pipeline for cerebral micro-haemorrhage detection in T2* MRI Published @ WorldCIST 2023
Suturing_Challenge_Approach Surgical AI models (YOLO, U-Net, ResNet50) for MICCAI OSS Challenge 🥈 2nd (2025 Task 2)
BraTS 2023/2024 Solutions Brain tumour segmentation with synthetic data augmentation (contributor) 🥇 1st (BraTS 2024 Task 1)

🔬 Current Focus

  • Medical image segmentation with MONAI
  • Deep learning for MRI and neuroimaging
  • 3D printing applications in medicine

🛠️ Tech Stack

Programming & Development

PyTorch Python scikit-learn Jupyter C++ HTML5 GitHub Git Linux

Medical Imaging & Research

MONAI FreeSurfer 3D Slicer Image Segmentation Medical Imaging MRI

3D Printing & Hardware

3D Printing Marlin Firmware Klipper

Documentation & Academic Tools

Markdown LaTeX Mendeley

📈 GitHub Stats

Popular repositories Loading

  1. MRIHemorrhageDetection MRIHemorrhageDetection Public

    Python code to detect and segment hemorrages in MRI scans using deep artificial neural networks

    Jupyter Notebook 1 1

  2. Suturing_Challenge_Approach Suturing_Challenge_Approach Public

    Team Algoritmi's attempt at the OSS challenge at MICCAI

    Jupyter Notebook 1

  3. Marlin Marlin Public

    Forked from MarlinFirmware/Marlin

    Marlin is an optimized firmware for RepRap 3D printers based on the Arduino platform. | Many commercial 3D printers come with Marlin installed. Check with your vendor if you need source code for yo…

    C++

  4. MyLDOVoron2.4Config MyLDOVoron2.4Config Public

    Backup of my LDO Voron 2.4 350mm printer files

  5. MyWebsite MyWebsite Public

    Personal website

    HTML

  6. Happy-Hare Happy-Hare Public

    Forked from moggieuk/Happy-Hare

    MMU software driver for Klipper (ERCF, Tradrack, Box Turtle, Night Owl, Angry Beaver, 3MS, ...)

    Python