This is a workflow for 16S rRNA analysis.

This workflow performs a metabarcoding analysis from the reads sequencing to the production of a report presenting the graphical results.

Microbiome and bioinformatics workflows for 16S rRNA, shotgun metagenomics, and network analysis.

This was created and refined during my PhD as the part of the scientific project. Codes are highly customizable. Watch out - Each code does a heatmap for absolutely different thing.

This repository is a place for codes I have used during my PhD for microbiome analysis of spider egg sacs. Two species were analysed: Parasteatoda tepidariorum and Pardosa lugubris. Three egg sac's conditions: environment + silk + eggs. This code was created in this 'simple adaptation' vibes, so I can tweak it here and there for the future studies.

QIIME2 Microbiome Analysis Workflow

This script I have created for my last PhD-related paper, as I needed to better understand the microbiome of cocoon's environment, cocoon's silk and cocoon's eggs. It also introduces more refined metagenomic data filtering.