BSR-Based Allele Calling Algorithm

Epidemiological surveillance in Python

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

In this repo. , "Cost Effective Lazy Forward Selection" Algorithm is implemented from scratch in python with only numpy library.

A Disease Outbreak Assistance system using machine learning and Artifitial Intelligence

metagenomics pipeline supporting The UnO Project for identifying pathogens in common across outbreak samples

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

Implementation of Complex Networks Algorithms

Multi-source public health intelligence system for epidemiological surveillance and early warning

HealthWatch is a mobile-first network that enables early outbreak detection by verifying local health observations in real time, transforming community data into actionable public health intelligence.

AI-powered, offline-first healthcare surveillance for the Chittagong Hill Tracts: DBSCAN outbreak detection, multi-modal medical logistics, and on-device (Ollama gemma3:4b) + Gemini AI consultation. React + FastAPI.

R scripts used in M Cavallaro, L Dyson, MJ Tildesly, D Todkill & MJ Keeling (2023) Spatio-temporal surveillance and early detection of SARS-CoV-2 variants of concern. J. R. Soc. Interface. 20: 20230410. 20230410.

AI-powered district health command centre for Kalahandi, Odisha. PHC staff report by voice note or register photo → Gemini parses it → outbreak early-warning, medicine stock forecasting, expiry-waste redistribution on Google Maps. Built for Build with AI: Code for Communities (Track 3: Smart Health).

Swipe through history's outbreaks like dating profiles. Free, open-source educational tool.

rancovr: Cluster detection in R with RAndom Neighbourhood COVeRing

Malaria surveillance analytics platform with district-level monitoring, outbreak detection, and automated reporting

Outbreak Detection Code (python and pyspark)

AI-powered epidemic monitoring platform with ChatGPT integration for outbreak tracking, prediction, public health insights, and real-time disease analytics.