Oxford Nanopore's Basecaller

Structural variation caller using third generation sequencing

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Sequence correction provided by ONT Research

A PyTorch Basecaller for Oxford Nanopore Reads

Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling

Long read / genome alignment software

A curated list of awesome nanopore analysis tools.

Assembly and binning of metagenomes

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

A bioinformatics tool for working with modified bases

PEPPER-Margin-DeepVariant

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Nanopore demultiplexing, QC and alignment pipeline

A collection of scripts and notes related to genomics and bioinformatics

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Methylation/modified base calling separated from basecalling.

Pod5: a high performance file format for nanopore reads.