R package for phylodynamics

1st PhD scientific research: The machine learning development on how i associated highly collerated large scaled molecular data with numerous traits

Code of the article that describes the molecular epidemiology analyses of OsHV-1 virus by whole genome sequencing approaches in French shellfish growing areas.

R package for entropy-informed detection of emerging viral variants and genomic surveillance. Implements per-site Shannon entropy, Gaussian mixture model site selection, Hellinger distance, and non-parametric change-point detection. Validated on SARS-CoV-2 Spike protein sequences from NCBI and GISAID databases.

Analysis pipeline and manuscript materials comparing influenza antigenic distance metrics with phylogenetic tree distances