microct

Automated cyst segmentation and counting pipeline for polycystic kidney disease µCT scans, using nnUNet and distance-transform peak detection with genetic algorithm parameter optimization.

Neural shape model (nsm) library - modified to work with modern and fossil lizard (Squamate) vertebrae

An implementation of a micro-CT INR using CuNeRF, Insant NGP, and RHINO methods.

Repository with EPmacroJ (Endoost Periost macro for imajeJ) for bone moments measurements based on Jenis Hopkins original MomentMacroJ_v1.4B. Software published in Sládek V. et all: Effect of deriving periosteal and endosteal contours from microCT scans on computation of cross-sectional properties in non-adults: the femur. J Anat. 2018 May 31.

Imports Stratovan Checkpoint files (*.ckpt) directly into R.

This project develops and evaluates a reproducible 2D U-Net pipeline for reducing rectangular metal-implant streak artifacts in micro-CT limb images while preserving surrounding anatomy.

Repository containing code to analyse microCT dataset of the rat uterus

A collection of ImageJ plugins developed by Prof. Dr. Karl-Heinz Kunzelmann for dental research and image analysis.