The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
Standardise TR/MH/IG data
The Atlas of Immunoglobulin Repertoires (TheAIR)
Comparison of gene usage in immune repertoires under different biological conditions
Construction of IHGV sequences from RNA-seq
(Under development) Computational framework for probabilistic models of immune receptor assembling.
Open Source python module to enable batch gold particle picking, filtering, processing & statistical modelling of TEM images produced by IGEM (immunogold electron microscopy).
IgIDivA (Immunoglobulin Intraclonal Diversification Analysis) is a purpose-built tool for the analysis of the intraclonal diversification process using high-throughput sequencing data. It is written in shiny R.
A pipeline for preprocessing and annotation of NGS immunoglobulin repertoire data.
Python and R Scripts for Statistical analysis of available immunogobulin variable genes
Simulation of false tandem substitutions from input sequencing data
2D proteomaps for Ig-fold protein domains — IgStrand-indexed widget
Web-based Antibody-Drug Conjugate (ADC) calculator: DAR by UV/Vis, HIC & LC-MS, conjugation design, yield/formulation, and an ADC registry. Single self-contained HTML file with a pure, tested calculation core.
Day 003 - BioML Build-Off: three AI agents build an immunoglobulin-locus + V(D)J explorer (Claude Opus 4.8 / Gemini 3.5 Flash / GPT-5.5). Open the live apps and vote at the website link.
ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
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