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igv

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Comprehensive somatic mutation analysis of paired tumor-control samples using high-throughput sequencing data. This project integrates variant calling, functional annotation, and structural alteration analysis to uncover clinically relevant genomic changes, estimate tumor purity and ploidy, and explore potential therapeutic targets in oncogenomics.

  • Updated Jul 24, 2025
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End-to-end NGS variant calling and functional annotation pipeline for Limulus polyphemus using GATK and SnpEff, with biological interpretation of high-impact immune and metabolic variants.

  • Updated Dec 13, 2025
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