Want to make a neighbourhood-scale synteny plot? Have too many genomic neighbourhoods? SyntenyQC may help!

A tool to remove genomic redundancy from cblaster gene cluster hits

Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.

Genome Mining in Prokaryotes

Antibiotic Resistant Target Seeker (ARTS)

Fungal bioActive compound Resistant Target Seeker (FunARTS)

Reproducible code and data repository for the fungal ICS BGC prediction publication. GitHub repository is managed by Grant Nickles. For any data related questions email gnickles@wisc.edu or gnick317@gmail.com. For publication questions reach out to the corresponding authors Dr. Drott at Milton.Drott@usda.gov or Dr. Keller at npkeller@wisc.edu.

f-BGM enables fungi-specific genome mining in high accuracy and interpretability

Genome Mining Workshop Overview

Genome scAle Substrate Specific Enzyme pRediction

SaPhARI: An Adaptable Bioinformatics Tool for the Discovery of Novel Phage Satellites

Web application to display and log job uploads for the Fungal bioActive compound Resistant Target Seeker (FunARTS)

Genome-mining workflows for natural products: search public genomes and transcriptomes, compare candidate clusters, and plan follow-up work.

Retrieve chemical classes (ClassyFire/NPClassifier), as well as BGC classifications for MIBiG BGCs and match them.

Reusable bacterial genome mining pipeline for assembled genome FASTA files using QUAST, Bakta, antiSMASH, GECCO, and combined BGC summary reporting.

Bioinformatic pipeline for prioritizing novel biosynthetic gene clusters (BGCs) from actinobacterial genomes against the MiBIG 4.0 reference space, with resistance-associated feature screening (Pfam domains and AMRFinderPlus).

Web application to display and log job uploads for the Antibiotic Resistant Target Seeker (ARTS)

A web UI for the fungal version of antiSMASH.

Protein structure similarity meets gene clustering mining: find gene clusters from genomically colocalised proteins.