Large-scale cell segmentation with cellpose.

Tutorial for scaling-up image analysis with dask

End-to-end pipeline for spinal-cord microscopy segmentation with Cellpose, tiling, and mask stitching.

Segmentation and analysis pipeline for high-resolution whole tissue images.

Cell seeding efficiency measurement using customized Cellpose SAM (cellpose4) models. The goal is to classify cells into four categories and calculate cell properties (number, average brightness, and average area) for each frame

A modular platform for end-to-end batch cell segmentation and quantification for microscopy images.

semi-automated postprocessing of cellpose segmented images

End-to-end pipeline for segmentation and quantitative analysis of fluorescence microscopy data to study phase separation

RoiEditor that can run as plugin for Fiji or as standalone Jython application

Image processing pipeline for multi-modal images

Julia wrapper for Cellpose v4 enabling high-performance biological image segmentation.