An interactive image processing program for biologists written in Python.

A ascii/text game library

A simple GUI for automatic and manual alignment across calcium imaging sessions.

Package for removing motion artifacts from two-channel imaging

Calcium combines the functionality of a digital whiteboard with a code editor and a terminal. It provides a versatile platform for collaborative brainstorming.

Signal Processing Toolbox for Calcium Imaging Data

These are tutorials I am making for using Neuro-Collection with ug4

This is MATLAB script created and used via the Trinkaus-Randall Lab at Boston University for the analysis of epithelial cellular calcium signaling during wound healing.

A Data Manipulation and Analysis Package for Calcium Indicator and Waveform Data

CalciumImaging analysis matlab pipeline for suite2p outputs

Code to simulate excitation-contraction coupling in cardiac cells using FE methods

Epithelial water and solute transport along the nephron with a focus on calcium transport and regulation.

Scripts for extraction and analysis of widefield calcium data from awake behaving mice.

Calcium imaging pipeline for R

Calcium wave simulation scripts

Code for IEEE ISBI 2018 publication.

营养学 | 骨质疏松症食养助手 - 基于国家卫健委《成人骨质疏松症食养指南（2026年版）》的AI科普对话助手

repository for R code from https://doi.org/10.5194/bg-18-2573-2021

Stimulus control function for running 2-photon neuronal activity imaging experiments presented in May, Cellini, van Breugel, and Nagel 2025 (bioRxiv).