Material for paper: 'Bacterial adhesion to curved surfaces in flow'
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Jun 2, 2026 - MATLAB
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bacterial-growth
Here are 9 public repositories matching this topic...
A spatially explicit, individual-based model of a rod-shaped bacterial colony growing on a shared, diffusing nutrient field.
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Jun 1, 2026 - Python
A browser-based pharmacodynamics simulator modeling bacterial growth using live ODE (RK4) solving
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May 11, 2026 - HTML
End-to-end pipeline for bacterial single-cell lineage, growth, and morphology analysis from TrackMate exports with publication-ready plots (Colab-friendly).
imagej fiji jupyter-notebook data-visualization microbiology image-analysis microscopy cell-tracking google-colab trackmate image-processing-python bacterial-growth lineage-analysis
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Mar 26, 2026 - Jupyter Notebook
Este repositorio contiene el código y los gráficos que lo acompañan para un proyecto sencillo centrado en el modelado de poblaciones bacterianas oxidantes del hierro utilizando tres modelos de cinética de crecimiento comúnmente utilizados: exponencial, logístico y Gompertz.
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Jun 20, 2023 - R
An interactive laboratory for cellular automata and agent-based models. Nutrient-limited bacterial colonies, Sugarscape, Lenia, Gray-Scott, spatial rock-paper-scissors. C simulation cores compiled to WebAssembly, with live measurement and swept phase diagrams.
c webgl simulation cellular-automata webassembly emscripten artificial-life agent-based-modeling reaction-diffusion complex-systems self-organization sugarscape schelling-model emergence lenia gray-scott complexity-science bacterial-growth
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Jul 14, 2026 - C
This code simulates the growth of beta-lactamase producing bacteria, inside droplets or in bulk and the associated survival rates.
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Dec 31, 2025 - Python
🔍 Analyze bacterial lineage, growth, and morphology with an automated pipeline for insightful, publication-ready results from TrackMate exports.
imagej jupyter-notebook data-visualization microbiology image-analysis microscopy cell-tracking google-colab trackmate image-processing-python bacterial-growth lineage-analysis
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Jul 17, 2026 - HTML
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