The simplest repo for scGPT inference, finetuning and training.
-
Updated
Jun 11, 2026 - Python
#
aixbio
Here are 3 public repositories matching this topic...
Reference-free, privacy-preserving wastewater pathogen surveillance for federated hospital networks. DNABERT-2 embeddings + Transformer-encoder VAE detect emerging anomaly clusters in unclassified reads. AIxBio Hackathon Track 2, Apart Research.
bioinformatics deep-learning metagenomics public-health anomaly-detection variational-autoencoder hackathon-project federated-learning pathogen-detection biosecurity wastewater-surveillance pandemic-preparedness dnabert aixbio
-
Updated
Apr 29, 2026 - Jupyter Notebook
Investigation into ML explainability/interpretability techniques, analysing the behaviour of ML models trained to predict whether a medical abstract is or is not related to pathogens.
python nlp machine-learning scikit-learn transformers pytorch pubmed bag-of-words research-project bert lime interpretable-ai shap captum biosecurity model-explainability aixbio
-
Updated
Feb 1, 2026 - Jupyter Notebook
Improve this page
Add a description, image, and links to the aixbio topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the aixbio topic, visit your repo's landing page and select "manage topics."