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1. SciAgent-toolkit SciAgent-toolkit Public

   Role-playing context management system for agentic harnesses, specialized for computational biology, but generalizable to other subject matters. WIP

   Python 1

2. scbio-docker scbio-docker Public

   Docker environment for bulk and single-cell sequencing preprocessing and downstream analysis

   Shell

3. llm-cli-suite llm-cli-suite Public

   minimal CLI tools to manage and monitor local LLMs on Linux machines

   Shell

4. RNAseq-toolkit RNAseq-toolkit Public

   My R convenience scripts for general RNAseq: DE, GSEA, etc.

   R

5. cafferychen777/mLLMCelltype cafferychen777/mLLMCelltype Public

   Cell type annotation for single-cell RNA-seq using multi-LLM consensus

   Python 645 55

6. TE-RNAseq-toolkit TE-RNAseq-toolkit Public

   My set of scripts, utilities to handle transposable elements workflows in RNAseq data

   R