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Updating cmake config for library-only #93

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Merged
andrewdavidsmith merged 2 commits into from
Nov 29, 2025
Merged

Updating cmake config for library-only #93

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CMakeLists.txt: adding a LIBRARY_ONLY config mode
andrewdavidsmith Nov 29, 2025
6d262ff
src/CMakeLists.txt: update so that we can avoid building the binary i…
andrewdavidsmith Nov 29, 2025
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3 changes: 2 additions & 1 deletion CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,8 @@ add_compile_options(
)

if(NOT PROJECT_IS_TOP_LEVEL)
set(STATIC_ANALYSIS OFF)
set(STATIC_ANALYSIS off)
set(LIBRARY_ONLY on)
endif()

if(STATIC_ANALYSIS)
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24 changes: 13 additions & 11 deletions src/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@

find_package(HTSLIB REQUIRED)

if(NOT TARGET smithlab_cpp)
if(NOT TARGET bamxx)
add_subdirectory(bamxx)
endif()
if(NOT TARGET smithlab_cpp)
Expand All @@ -28,16 +28,18 @@ add_library(abismal_objs OBJECT
AbismalIndex.cpp
simreads.cpp
)
target_link_libraries(abismal_objs PUBLIC bamxx smithlab_cpp)
target_include_directories(abismal_objs PUBLIC ${CMAKE_CURRENT_SOURCE_DIR})
# ADS: below, for config.h
target_include_directories(abismal_objs PUBLIC ${CMAKE_BINARY_DIR})

add_executable(abismal abismal_main.cpp)
# ADS: below, for config.h
target_include_directories(abismal PUBLIC ${CMAKE_BINARY_DIR})
target_link_libraries(abismal PUBLIC
abismal_objs
target_link_libraries(abismal_objs PUBLIC
bamxx
smithlab_cpp
HTSLIB::HTSLIB
)
# ADS: CMAKE_BINARY_DIR for config.h
target_include_directories(abismal_objs PUBLIC
${CMAKE_CURRENT_SOURCE_DIR}
${CMAKE_BINARY_DIR}
)

if(NOT LIBRARY_ONLY)
add_executable(abismal abismal_main.cpp)
target_link_libraries(abismal PRIVATE abismal_objs)
endif()