Strict SAM format as default#87

Merged

andrewdavidsmith merged 6 commits into

strict-sam-as-default

Oct 6, 2025

Commits on Oct 6, 2025

src/abismal.cpp: using the strict-sam mode as default
andrewdavidsmith
committed
src/abismal.cpp: attempting to add a label for the stats output even if it's just single-end, which will allow for easier parsing in the general case
andrewdavidsmith
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src/abismal.cpp: fixing some formatting in stats output
andrewdavidsmith
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data/md5sum.txt: updating hashes for SAM strands and for mstats output formats
andrewdavidsmith
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../src/abismal.cpp: fixing 'mate1' to 'read1' so I eventually won't have to keep dealing with the terminology...
andrewdavidsmith
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data/md5sum.txt: updating hashes for 'mate' to 'read'
andrewdavidsmith
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