Project Thousand-Gemma (PTG)

A distributed, prompt-based cortical mesh simulator written in Rust — implementing the organizational principles of Jeff Hawkins' Thousand Brains Theory of Intelligence as a multi-agent system.

Overview

Project Thousand-Gemma (PTG) is an open-source, high-performance computing framework written in Rust that emulates the core organizational tenets of Jeff Hawkins' Thousand Brains Theory of Intelligence. Rather than relying on a single, massive, monolithic LLM context window to ingest, process, and synthesize complex multi-modal data, PTG decomposes problems across hundreds or thousands of specialized, structurally localized, virtual cortical columns.

Each virtual cortical column is instantiated as an independent, asynchronous processing unit bound to a single local, highly optimized LLM inference engine (Gemma-4-2B-Multimodal). The architecture enforces strict domain-specific cognitive, empirical, and sensory prisms via hyper-targeted system prompts and localized spatial reference frames. Instead of centralized top-down governance, global intelligence and semantic stability emerge bottom-up through a decentralized, multi-round consensus mechanism powered by lateral token-passing, neighborhood weight-voting, and structural context injection.

By leveraging unified memory architectures on modern high-end developer workstations, PTG aims to run massive-scale modular cognitive networks without distributed clusters or supercomputing infrastructure.

📐 Source of truth: the full architectural blueprint lives in docs/SPECIFICATION.md.

Why not one big model?

Failure mode of monolithic LLMs	PTG's neocortical answer
Context dilution — attention degrades and "lost-in-the-middle" at long contexts	Each column holds a small, focused context bound to one reference frame
Brittle generalization — catastrophic interference across domains	Columns are domain-specialized; consensus resolves ambiguity laterally
Explosive compute — quadratic attention $O(C^2)$ on one giant context	Many small contexts share one engine via prefix caching

Biological → software mapping

Biological concept (Hawkins)	Software realization (PTG)
Cortical column	An isolated CorticalColumn instance with a targeted system prompt
Sensory input / afferent pathway	Parallel fan-out of stimulus to a shared inference engine
Reference frames / coordinates	Forced structural JSON bounding a column's output space
Lateral connections	Topology-constrained token injection from neighbor outputs
Inter-column voting	Multi-round asynchronous consensus with metric-based convergence
The thalamus	A single shared local inference engine with prefix caching

Repository layout

brain/
├── crates/
│   ├── ptg-core        # CorticalColumn, ColumnOutputSchema (validate_for_sphere), Stimulus/multimodal, PROMPT_*
│   ├── ptg-vllm        # Shared inference engine ("thalamus"): ColumnEngine trait + reqwest InferenceEngine, list_models
│   ├── ptg-consensus   # Convergence math (mean/delta/cosine over confidence vectors, ndarray)
│   ├── ptg-runtime     # CorticalMesh: 3-phase epoch loop (fan-out + lateral injection + integration)
│   └── ptg-cli         # `ptg` binary (--image-url, --image-detail, --probe, --dry-run)
└── docs/               # Specification, architecture, roadmap

Getting started

Start here: the quick start below, or docs/TUTORIAL.md for the long-form version (abstraction-level experiments, column packs).

1. Install the CLI suite

Download the latest release for your platform from the releases page. You need v0.3.1+ for the setup/serve phases below — older releases don't have them. Set VERSION to the release you downloaded (e.g. v0.3.4):

VERSION=v0.3.4   # or whichever release you downloaded

Platform	Asset
Linux (x86_64)	ptg-$VERSION-x86_64-unknown-linux-gnu.tar.gz
macOS — Apple Silicon (M-series)	ptg-$VERSION-aarch64-apple-darwin.tar.gz
macOS — Intel	ptg-$VERSION-x86_64-apple-darwin.tar.gz
Windows (x86_64)	ptg-$VERSION-x86_64-pc-windows-msvc.zip

# Linux / macOS
tar xzf ptg-$VERSION-<your-target>.tar.gz
cd ptg-$VERSION-<your-target>/bin
./ptg --version        # the cortical mesh runner
./ptg-bench --help     # the benchmark harness (A1/A2/A3 conditions)
./ptg-judge --help     # the judge (perturbation delta + blind LLM)

# Windows
Expand-Archive "ptg-$env:VERSION-x86_64-pc-windows-msvc.zip"
cd "ptg-$env:VERSION-x86_64-pc-windows-msvc\bin"
.\ptg.exe --version

macOS binaries are Apple Developer ID signed (valid chain to Apple Root CA, hardened runtime) and submitted for notarization (Apple accepts the submission in CI). The notarization ticket is not stapled to these bare CLI tarballs — xcrun stapler only attaches tickets to .app/.pkg/.dmg artifacts, not Mach-O executables — so a first run on a fully-offline, locked-down Mac may show a one-time Gatekeeper prompt that resolves once online. The signature itself is sufficient for normal CLI use. Verify after download:

codesign --verify --strict ./ptg        # signature valid (prints nothing on success)
codesign -dv ./ptg                      # Authority=Developer ID Application: ...

Linux/Windows binaries are unsigned.

Or build from source (Rust 1.85+):

cargo build --release -p ptg-cli   # binaries land in target/release/{ptg,ptg-bench,ptg-judge}

2. Meet the two prerequisites

ptg can set up its runtime for you, but two things must be in place first (neither is automated — they're honest prerequisites, documented up front):

1. llama-server must be installed and findable — in PATH, via the PTG_LLAMA_SERVER env var, at ~/llama-spike/llama.cpp/build/bin/, or at ~/.cache/ptg/bin/. Build it from llama.cpp:

   git clone https://github.com/ggml-org/llama.cpp && cd llama.cpp
   cmake -B build && cmake --build build --config Release
   # binary: build/bin/llama-server

2. Accept the Gemma license (Gemma is gated). Go to the model's HuggingFace page, accept the license, then authenticate — either run hf login (or huggingface-cli login) or set the HF_TOKEN env var.

3. Quick start: ptg setup + ptg serve

With the prerequisites met, ptg prepares everything else: it detects llama-server, downloads the verified Gemma QAT model (~2.7 GB) into the cache, and writes a config (~/.config/ptg/config.toml) that the other commands read. After that, running a mesh is a one-liner.

# 1. Prepare: detect server, download model, write config
ptg setup --yes

# 2. Start the inference server (foreground; leave it running)
ptg serve

# 3. In another terminal, run a mesh — no flags needed, config is remembered
ptg --probe                            # verify the server
ptg --topology ring --columns 4        # your first mesh

ptg setup uses your HF_TOKEN only for the download and never persists it. Both ptg setup and ptg serve accept --dry-run to preview exactly what they'll do. If llama-server is missing, ptg setup detects that and prints the install instructions from step 2 above.

Model setup (3 tiers)

Tier	Model	Memory	Notes
Default	unsloth/gemma-4-E2B-it-qat-GGUF (QAT)	~2.7 GB	3× less memory, drop-in GGUF. ptg setup default.
Fallback	ggml-org/gemma-4-E2B-it-GGUF:Q4_K_M	~3.5 GB	Balanced default if QAT unavailable.
Scaling	TurboQuant KV-cache (fork)	6× KV cache	Past the memory wall; not drop-in.

# The modern flow (recommended):
ptg setup --yes   # then: ptg serve

# The legacy flow (still works; what ptg setup/serve were ported from):
scripts/start-gemma4-qat.sh          # start the QAT model server (port 18136)
cargo run -p ptg-cli --bin ptg -- --probe \
    --vllm-url http://127.0.0.1:18136 --model gemma-4-e2b-qat

cargo run -p ptg-cli --bin ptg -- \   # your first mesh run
    --vllm-url http://127.0.0.1:18136 --model gemma-4-e2b-qat \
    --topology ring --columns 4 --min-ticks 2 --max-tokens 1024 --temperature 0

Column packs (abstraction-level experiments)

Swap column system prompts via a TOML pack to test how a column's abstraction level (high-level physics vs mid-level shapes vs low-level sequences) changes what the mesh converges to:

# 9 columns at 3 abstraction levels on a 3×3 torus
cargo run -p ptg-cli --bin ptg -- --dry-run \
    --column-pack examples/column-packs/abstraction-ladder-9.toml \
    --topology torus --torus-width 3 --torus-height 3 --columns 9

See examples/column-packs/ and the tutorial §8–9 for experiment recipes.

Quick checks

cargo check --workspace                        # type-check all crates
cargo fmt --all                                # format
cargo clippy --workspace --all-targets -- -D warnings
cargo test                                     # 78 tests

Pluggable topologies (Phase 3)

The --topology flag selects the lateral mesh layout over --columns replicated domain spheres. --dry-run prints the full wiring (columns + listener->source edges) without any inference:

# Named 4-column reference graph (default, unchanged)
cargo run -p ptg-cli --bin ptg -- --dry-run

# Directed ring over 8 columns
cargo run -p ptg-cli --bin ptg -- --dry-run --topology ring --columns 8

# 3x3 torus (9 columns, 4 neighbors each)
cargo run -p ptg-cli --bin ptg -- --dry-run --topology torus --torus-width 3 --torus-height 3

# Seeded small-world (deterministic given --small-world-seed)
cargo run -p ptg-cli --bin ptg -- --dry-run --topology small-world \
    --columns 20 --small-world-degree 4 --small-world-rewire 0.2

Degeneracy guardrails reject parameters where distinct topologies collapse to the same graph (e.g. ring-bi with < 4 columns == fully-connected; small- world with degree*2 >= columns silently under-rewires).

Early research signal: lateral consensus can homogenize frames

⚠️ This is a pilot observation from a single live QAT run (9-column torus, abstraction-ladder-9.toml), not a benchmarked result. Treat it as a research direction worth investigating, not a confirmed claim. Full methodology and confound analysis live in docs/BENCHMARKING.md.

Three end-to-end runs against the live Gemma 4 QAT server surfaced a shared, unexpected theme: lateral consensus is a homogenizing force. The mesh tends to converge toward the dominant interpretation rather than preserving minority or niche frames.

Observation	What happened	Status
Confidence stratifies by abstraction level	On a causal prompt, high-level (whole-system) columns reported mean confidence ~0.92 while low-level (token/sequence) columns reported ~0.68 — and produced more coherent causal narratives.	Confirmed on this run
Low-level drift, but no divergence	On deliberately ambiguous token-sequence input, low-level columns latched onto literal token prediction ("the next token is likely…"), but lateral exchange pulled them back toward the high-level physics framing instead of letting the mesh fragment.	Nuanced
Topology changes propagation speed	The niche "context" column's framing propagated rapidly across a 4-neighbor torus (0.98 conf, system-failure language adopted by neighbors) but stayed isolated in its own frame on a 1-neighbor ring (0.85 conf).	Confirmed on this run

Open research questions

This signal points at a central tension in the Thousand-Brains model that is worth digging into:

• When does lateral consensus improve perception vs. erase useful minority frames? Homogenization is great when the dominant frame is correct; it is a failure mode when the dissenting/niche view is the one that matters.
• How do topology, confidence thresholds, and --min-ticks modulate homogenization? Ring vs torus already shows a large effect; degree and rewiring probability are untested.
• Can weighted/attention-based routing (§9.1, deferred) preserve dissenting useful frames instead of majority-voting them away?
• Is the confidence stratification by abstraction level a calibration artifact (high-level columns may simply self-report higher confidence) or a real cognitive signal? The judge harness (ptg-judge) is designed to separate these, but the scaled run (A3) has not been executed.

See the roadmap for the planned A3 scaled benchmark that would turn this pilot signal into evidence.

First mitigation shipped (Phase 3A): the convergence loop now also supports a model-independent prediction-stability signal (--min-prediction-similarity, token-Jaccard of successive predictions) that does not rely on the self-reported confidence a model can game — the same tick_outputs / convergence_reason plumbing gives us the within-run measurement needed to study homogenization directly.

Second mitigation shipped (Phase 3B): diversity-preserving lateral routing (--routing-policy diversity, MMR-style selection that keeps dissimilar neighbor frames in context instead of majority-voting them away). On a single live run it preserved a niche column's frame that plain all voting had erased (the psych column held its operator-discount framing at 0.92 conf instead of collapsing to physics "catastrophic failure" language at 0.98). Every routing decision is observable per-tick (tick_outputs.routes), so homogenization can now be measured, not just observed.

Status

Phases 0–3 are complete and panic-free. The workspace implements the domain model, a shared InferenceEngine client, the three-phase epoch loop with lateral context injection and metric-based convergence, pluggable topologies, attention-routed lateral connections, and a ptg CLI.

Benchmark result (directional, pre-registered)

A full benchmark + judge methodology (see docs/BENCHMARKING.md) was used to test whether the lateral-exchange mechanism improves answer quality over an equal-call no-lateral control. The honest arc:

• Raw lateral-text exchange is quality-neutral to negative (4-col coin flip; 150-col 14% win, 57% echo leakage). Do not scale the raw medium.
• Structured lateral exchange (bounded claim-excerpt + synthesis directive) on a 4B-class model is quality-positive and saturates at ~80–85% across 4 → 50 → 150 columns: 78% → 85% → 82.4% (powered 150-col, CI [78%, 86%], p ≈ 0), with echo under 10% and length-confounding ruled out.

Caveats are documented in the findings docs (notably 20% mesh-run survivorship at 150 cols from HTTP-500 failures in math columns). Cite STRUCTURED_LATERAL_E4B_150COL_POWERED.md for the headline, not the directional 1p1r figure.

Next — survivorship follow-up, the A4 self-revision control, and full semantic convergence (blocked on the embeddings endpoint) — are tracked in the roadmap.

Earlier phases

Phase 2 added: a Stimulus model (text + multimodal image/audio serializing to the OpenAI content-array shapes), per-sphere reference-frame schema validation, confidence-aware global integration (accepted/rejected_outputs), and a live-inference harness (--probe + an #[ignore] integration test). It was validated end-to-end against a live llama.cpp server (gemma-4-e4b): a 2-tick text epoch converged in 1 tick at mean confidence 0.94 with all four columns passing strict per-sphere validation. 32 unit tests; clippy-clean (-D warnings).

Documentation

• Tutorial — start here: server setup, first run, column packs, experiment recipes
• Specification — full architectural blueprint (source of truth)
• Architecture — crate-level design and data flow
• Roadmap — implementation phases

License

Dual-licensed under MIT or Apache-2.0, at your option (LICENSE-MIT, LICENSE-APACHE). © 2026 Saorsa Labs.