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pysamstats

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forked from alimanfoo/pysamstats

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A small Python utility for generating per-position statistics (coverage, etc.) from SAM/BAM files via pysam.

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Name		Name	Last commit message	Last commit date
fixture		fixture
pysam		pysam
samtools		samtools
.gitignore		.gitignore
.project		.project
.pydevproject		.pydevproject
README.md		README.md
profile_baseq.py		profile_baseq.py
profile_coverage.py		profile_coverage.py
profile_mapq.py		profile_mapq.py
profile_minimal_coverage.py		profile_minimal_coverage.py
profile_tlen.py		profile_tlen.py
pysamstats.pyx		pysamstats.pyx
see_baseq.py		see_baseq.py
see_coverage.py		see_coverage.py
see_mapq.py		see_mapq.py
see_minimal_coverage.py		see_minimal_coverage.py
see_normed_coverage.py		see_normed_coverage.py
see_tlen.py		see_tlen.py
see_variation.py		see_variation.py
setup.py		setup.py
speed_baseq.py		speed_baseq.py
speed_coverage.py		speed_coverage.py
speed_mapq.py		speed_mapq.py
speed_minimal_coverage.py		speed_minimal_coverage.py
speed_tlen.py		speed_tlen.py
speed_variation.py		speed_variation.py

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pysamstats

A small Python utility for generating per-position statistics (coverage, etc.) from SAM/BAM files via pysam.

About

A small Python utility for generating per-position statistics (coverage, etc.) from SAM/BAM files via pysam.

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