STRY0020817 - Manually update gene-drug key database

[emarinier]

Description

StarAMR's gene-drug database is missing entries corresponding to IDs within the CGE Resfinder database. These are primarily variants of existing genes. We need to add this missing IDs to the gene-drug key to prevent unknown[...] from being reported.

Acceptance Criteria

• Add corresponding entries for the missing phenicol FloR and phenicol CmlA.
• Note the capitalization differences in gene IDs from previous entries. The newer entries in the CGE database have different capitalization than the old entries. We will probably need to match these differences correctly.
• Test that the new and old floR/FloR and cmlA/CmlA are being handled correctly.

[apetkau]

This looks really great Eric 😄. Thank you. I have one requested change (below) but have approved the overall PR.

Requested change

1. Could you update the version of the gene-drug keys from 032525 to 032525.1? In the past, I had been adding a minor version number after the date so indicate we've modified the gene-drug key from the Excel file we were sent. These versions are specifically stored in:

   staramr/staramr/databases/resistance/data/info.ini

   Lines 1 to 3 in 472031f

   	[Versions]
   	pointfinder_gene_drug_version = 032525
   	resfinder_gene_drug_version = 032525

[emarinier]

This looks really great Eric 😄. Thank you. I have one requested change (below) but have approved the overall PR.

Requested change

1. Could you update the version of the gene-drug keys from `032525` to `032525.1`? In the past, I had been adding a minor version number after the date so indicate we've modified the gene-drug key from the Excel file we were sent. These versions are specifically stored in: https://github.com/phac-nml/staramr/blob/472031fc630c1d75b10bc945b7abf2ecaeb224f6/staramr/databases/resistance/data/info.ini#L1-L3

Updated in 598ef25

Only the Resfinder gene-drug key was modified though, so I only updated that version.