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1. grifo grifo Public

   GRIFO is an analysis pipeline for nanopore metabarcoding sequence data

   Jupyter Notebook 3

2. Stickleback-parasites-2016 Stickleback-parasites-2016 Public

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3. gbif_playground gbif_playground Public

   Some isolated scripts that might be useful when dealing with GBIF data

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4. CDS-miner CDS-miner Public

   CDS-miner aligns a list of query CDS in fasta format to a genome assembly in order to retrieve similar CDS above a specific threshold. Results are stored in fasta format. It works for eukaryote gen…

   Python 1

5. DaCA-utils DaCA-utils Public

   DaCA-utils is a collection of utility scripts written in python to convert output of metabarcoding pipelines according to Darwin Core Archive standards for upload to GBIF.

   Jupyter Notebook 1

6. useful_short_scripts useful_short_scripts Public

   A collection of short scripts that do useful stuff for bioinformatics and biodiversity informatics.