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    50 repositories

    • niimath

      Public
      niimath - a clone of fslmaths. Try the live demo:
      C
      •
      Other
      •23•82•4•0•Updated Jul 20, 2026Jul 20, 2026

    • EdgeReg

      Public
      Fast client-side medical image registration
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jul 20, 2026Jul 20, 2026

    • dcm2niix

      Public
      dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
      researchjpegdicom
      researchjpegdicomneurosciencemrineuroimagingnifti-formatmri-imagesdicom-imagesnifti
      C++
      •
      Other
      •262•1.2k•0•0•Updated Jul 15, 2026Jul 15, 2026

    • niimath_tests

      Public
      Validation tests for niimath https://github.com/rordenlab/niimath
      TypeScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jul 12, 2026Jul 12, 2026

    • datalad-rs

      Public
      Keep code, data, containers under control with git and git-annex
      Rust
      •
      MIT License
      •0•0•0•0•Updated Jun 29, 2026Jun 29, 2026

    • bids-validator-rs

      Public
      Rust validator for the Brain Imaging Data Structure
      Rust
      •
      MIT License
      •1•0•0•0•Updated Jun 29, 2026Jun 29, 2026

    • niimath_gpl

      Public
      GPL components for niimath
      C
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jun 28, 2026Jun 28, 2026

    • dwi2trx

      Public
      Browser-only diffusion MRI pipeline: convert DICOMs, fit tensors, and track streamlines locally with WebGPU.
      TypeScript
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Jun 25, 2026Jun 25, 2026

    • SIAM

      Public
      Full head segmentation
      Python
      •
      Apache License 2.0
      •7•0•0•0•Updated May 19, 2026May 19, 2026

    • afni

      Public
      Official AFNI source and documentation
      C
      •
      Other
      •117•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • allineate-benchmark

      Public
      Benchmark for 3dAllineate optimizations
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • niivuegpu-demo

      Public
      WebGPU/WebGL2 backends
      0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • glb-loader

      Public
      GLTF glb loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •2•1•1•0•Updated Dec 13, 2025Dec 13, 2025

    • MRIcroGL

      Public
      v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
      visualizationlazarusopengl
      visualizationlazarusopenglglsldicomvolume-renderingniftibids-formatdicom-viewermricrogl
      Python
      •
      Other
      •38•287•2•1•Updated Nov 23, 2025Nov 23, 2025

    • niimath-bitmap

      Public
      Tutorial for volume to bitmap creation
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • nanojpeg

      Public
      a compact JPEG decoder
      C
      •
      MIT License
      •0•0•0•0•Updated Oct 13, 2025Oct 13, 2025

    • dcm_bench

      Public
      Python script to compare DICOM compression performance
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Oct 11, 2025Oct 11, 2025

    • itu-t81_issue

      Public
      Different interpretations for ITU-T81 compression
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • soop-dwi

      Public
      Curation and processing of diffusion images
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•1•0•1•Updated Jul 17, 2025Jul 17, 2025

    • soop-ct

      Public
      Stroke Outcome Optimization Project (SOOP) Computed Tomography scripts
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Jun 27, 2025Jun 27, 2025

    • CancelForWeb

      Public
      Simple web-based continuous measures for assessing spatial neglect
      HTML
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated May 29, 2025May 29, 2025

    • pythonScripts

      Public
      Handy Python scripts for neuroimaging
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•2•1•0•Updated Apr 28, 2025Apr 28, 2025

    • zlib

      Public
      Cloudflare fork of zlib with massive performance improvements
      C
      •
      Other
      •2.8k•0•0•0•Updated Apr 7, 2025Apr 7, 2025

    • pyScripts

      Public
      Handy Python scripts for neuroimaging
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Mar 13, 2025Mar 13, 2025

    • niivue-macacc

      Public
      NiiVue viewer for MACACC Dataset
      JavaScript
      •
      Other
      •0•0•0•0•Updated Mar 7, 2025Mar 7, 2025

    • minc-loader

      Public
      minc loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Mar 2, 2025Mar 2, 2025

    • trx-javascript

      Public
      JavaScript reader and benchmark for tractography streamline formats
      TypeScript
      •4•0•0•0•Updated Feb 16, 2025Feb 16, 2025

    • draco-loader

      Public
      Draco loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • vox-loader

      Public
      MagicaVoxel loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Feb 10, 2025Feb 10, 2025

    • ds-loader

      Public
      3ds loader plugin for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Feb 10, 2025Feb 10, 2025
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