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    16 repositories

    • ern

      Public
      R library to estimate the Effective Reproduction Number (Rt)
      R
      •
      Other
      •3•6•21•0•Updated Jul 21, 2026Jul 21, 2026

    • reem

      Public
      Respiratory infection forecaster
      R
      •0•5•4•0•Updated Dec 15, 2025Dec 15, 2025

    • fate-model-manuscript

      Public
      Mechanistic modeling of in-sewer viral fate and transport of SARS-CoV-2 to enhance wastewater disease surveillance strategies
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 17, 2025Oct 17, 2025

    • casteval

      Public
      Evaluate timeseries forecasts
      R
      •
      GNU General Public License v3.0
      •0•1•9•0•Updated Aug 27, 2025Aug 27, 2025

    • .github

      Public
      0•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • reemscenex

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•7•0•Updated Apr 15, 2025Apr 15, 2025

    • wem

      Public
      Wastewater Epidemic Model
      HTML
      •
      MIT License
      •4•15•6•0•Updated Jun 12, 2024Jun 12, 2024

    • provoc

      Public
      PROportions of Variants of Concern using counts, coverage, and a variant matrix.
      R
      •
      Other
      •2•2•0•0•Updated Apr 10, 2024Apr 10, 2024

    • Stormwater-Management-Model

      Public
      Dynamic hydrology-hydraulic water quality simulation model
      C
      •230•0•0•0•Updated Feb 15, 2024Feb 15, 2024

    • ecurve

      Public
      Enhanced Standard Curve Model
      R
      •
      Other
      •0•5•4•0•Updated Oct 6, 2023Oct 6, 2023

    • angedist

      Public
      Antigenic Genetic Distance
      R
      •0•0•1•0•Updated Nov 23, 2022Nov 23, 2022

    • publication-2022-flu-drift

      Public
      Code associated with "Antigenic drift and epidemiological severity of seasonal influenza in Canada" by Chen et al.
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 9, 2022Sep 9, 2022

    • phacstyle

      Public
      Apply pretty style to existing ggplot objects
      R
      •
      MIT License
      •0•0•1•0•Updated Dec 20, 2021Dec 20, 2021

    • see-also

      Public
      Links to other GoC or PHAC/HC GitHub Resources
      0•0•0•0•Updated Apr 1, 2021Apr 1, 2021

    • salt_ode

      Public
      Transmission model for Salmonella Heidelberg in broilers using ordinary differential equations (ODEs)
      model
      model
      R
      •0•0•0•0•Updated Sep 9, 2019Sep 9, 2019

    • vtec_multi-path

      Public
      model
      model
      0•0•0•0•Updated Jul 22, 2019Jul 22, 2019
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