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    105 repositories

    • scilifelab-metadata-templates

      Public
      This repository stores metadata templates in use at SciLifeLab, organized according to data type.
      Python
      •
      MIT License
      •2•1•1•2•Updated Jul 21, 2026Jul 21, 2026

    • RDM-guidelines

      Public
      This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.
      HTML
      •
      MIT License
      •6•5•13•4•Updated Jul 21, 2026Jul 21, 2026

    • spp-wagtail

      Public
      A temp repo to adapt swedish-pathogens-portal for wagtail
      Python
      •
      MIT License
      •0•1•1•7•Updated Jul 21, 2026Jul 21, 2026

    • kiarva-backend

      Public
      Public version of kiarva-backend.
      Python
      •
      MIT License
      •0•0•0•1•Updated Jul 21, 2026Jul 21, 2026

    • kiarva-frontend

      Public
      TypeScript
      •
      MIT License
      •0•1•0•20•Updated Jul 21, 2026Jul 21, 2026

    • precision-medicine-portal

      Public
      React project for the frontend of the Precision Medicine Portal by DC Data Science Node
      TypeScript
      •
      Other
      •0•2•0•2•Updated Jul 21, 2026Jul 21, 2026

    • Anubis

      Public
      Proposal submission and review handling system.
      Python
      •
      MIT License
      •3•2•2•6•Updated Jul 21, 2026Jul 21, 2026

    • dds_cli

      Public
      The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.
      pythoncommand-lineclick
      pythoncommand-lineclick
      Python
      •
      MIT License
      •14•13•0•44•Updated Jul 21, 2026Jul 21, 2026

    • dds_web

      Public
      A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
      pythonflask
      pythonflask
      Python
      •
      Other
      •9•9•0•88•Updated Jul 21, 2026Jul 21, 2026

    • serve-charts

      Public
      SciLifeLab Serve charts repository
      HTML
      •
      Other
      •1•1•0•0•Updated Jul 20, 2026Jul 20, 2026

    • serve

      Public
      SciLifeLab Serve is a platform offering machine learning model serving, data science app hosting (Shiny, Gradio, Streamlit, Dash, etc.), and other tools to life…
      Python
      •
      Apache License 2.0
      •5•15•0•0•Updated Jul 20, 2026Jul 20, 2026

    • genome-portal

      Public
      This is the repository for the Swedish Reference Genome Portal, a service facilitating access and discovery of genome data of non-model eukaryotic species studi…
      Python
      •
      MIT License
      •1•0•0•3•Updated Jul 19, 2026Jul 19, 2026

    • divbase

      Public
      (Work in Progress) DivBase - A service to manage, query and version VCF files and associated sample metadata
      Python
      •
      MIT License
      •0•2•0•5•Updated Jul 17, 2026Jul 17, 2026

    • data.scilifelab.se

      Public
      SciLifeLab Data Platform
      HTML
      •
      MIT License
      •5•2•0•0•Updated Jul 16, 2026Jul 16, 2026

    • openllm-setup

      Public
      Setup files and maintenance scripts for the Open LLM deployments.
      Go Template
      •
      MIT License
      •0•2•0•3•Updated Jul 15, 2026Jul 15, 2026

    • pathogens-portal

      Public
      Swedish pathogens portal
      bootstrapmarkdownhugo
      bootstrapmarkdownhugocovid-19
      HTML
      •
      MIT License
      •28•13•1•0•Updated Jul 10, 2026Jul 10, 2026

    • swedish-pathogens-portal

      Public
      WIP repository for Swedish Pathogens Portal 2.0
      HTML
      •
      MIT License
      •0•2•2•0•Updated Jul 10, 2026Jul 10, 2026

    • data-centre-template

      Public template
      Template repository for SciLifeLab Data Centre repositories
      MIT License
      •0•1•0•2•Updated Jul 7, 2026Jul 7, 2026

    • openllm-docs

      Public
      Dockerfile
      •0•0•0•1•Updated Jul 7, 2026Jul 7, 2026

    • DIGIfor1Health_web

      Public
      SCSS
      •
      MIT License
      •1•0•2•1•Updated Jun 29, 2026Jun 29, 2026

    • open-webui

      Public
      User-friendly AI Interface (Supports Ollama, OpenAI API, ...)
      Python
      •
      Other
      •21k•0•0•0•Updated Jun 23, 2026Jun 23, 2026

    • scilifelab-ai-agent-mcp-workshop-2026-06-09

      Public
      A workshop on "Developing AI Agents in Life Sciences" by SciLifeLab Data Centre. Hands-on sessions at Korallrevet, Natrium, Medicinaregatan 7B, Gothenburg, intr…
      Jupyter Notebook
      •
      MIT License
      •4•9•0•1•Updated Jun 10, 2026Jun 10, 2026

    • omero-custom-images

      Public
      Custom images for SciLifeLab OMERO
      Python
      •0•0•0•1•Updated May 26, 2026May 26, 2026

    • omero-nfs-export

      Public archive
      Dockerfile
      •0•0•0•1•Updated May 25, 2026May 25, 2026

    • OrderPortal

      Public
      A portal for orders (requests, project applications, etc) to a facility from its users.
      Python
      •
      MIT License
      •14•7•6•9•Updated May 22, 2026May 22, 2026

    • test-access-repo

      Public
      0•0•0•1•Updated May 21, 2026May 21, 2026

    • serve-inveniordm

      Public
      Custom InvenioRDM image for SciLifeLab Serve
      Python
      •
      MIT License
      •0•0•0•1•Updated May 13, 2026May 13, 2026

    • ids-project-tracking-one-pager

      Public
      One pager for IDS project tracking
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated May 13, 2026May 13, 2026

    • openwebui-locust

      Public
      Load testing Open WebUI deployments using Locust
      Python
      •
      MIT License
      •0•1•0•1•Updated May 13, 2026May 13, 2026

    • omero-server-extended

      Public archive
      Custom Docker image for the OMERO server, bundling needed extensions such as omero-metadata and other automation scripts. The goal is to provide a self-containe…
      Python
      •0•0•0•1•Updated May 13, 2026May 13, 2026
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