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    52 repositories

    • atomworks

      Public
      A generalized computational framework for biomolecular modeling.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •47•433•22•7•Updated Jul 17, 2026Jul 17, 2026

    • rosetta

      Public
      The Rosetta Bio-macromolecule modeling package. Available through license with the University of Washington.
      protein-structureprotein-designenzyme-design
      protein-structureprotein-designenzyme-designmacromolecular-modelingantibody-design
      C++
      •
      Other
      •165•454•26•26•Updated Jul 17, 2026Jul 17, 2026

    • RFdiffusion

      Public
      Code for running RFdiffusion
      Python
      •
      Other
      •631•3k•223•22•Updated Jul 15, 2026Jul 15, 2026

    • foundry

      Public
      Central repository for biomolecular foundation models with shared trainers and pipeline components
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •168•907•72•11•Updated Jul 10, 2026Jul 10, 2026

    • documentation

      Public
      Documentation for Rosetta Applications. The source for the Rosetta documentation wiki.
      PostScript
      •
      Other
      •5•10•2•15•Updated Jul 2, 2026Jul 2, 2026

    • pyrosetta_viewer3d

      Public
      Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab
      Python
      •
      MIT License
      •3•11•5•0•Updated Jun 28, 2026Jun 28, 2026

    • HBDesigner

      Public
      HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an input protein backbone.
      Python
      •
      MIT License
      •0•15•0•0•Updated Jun 25, 2026Jun 25, 2026

    • .github

      Public
      Repository to house information about the Rosetta Commons GitHub organization.
      0•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • frustraMPNN

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•15•0•5•Updated May 18, 2026May 18, 2026

    • rc

      Public
      Utility to run RosettaCommons tools
      Rust
      •
      MIT License
      •3•14•0•0•Updated May 5, 2026May 5, 2026

    • pyrosetta-extras

      Public
      PyRosetta Extras: a repository for extra PyRosetta scripts, tools, unit testing, and documentation
      Python
      •
      MIT License
      •1•0•0•0•Updated May 2, 2026May 2, 2026

    • tools

      Public
      Tools for parsing Rosetta source code and scripts for running specific Rosetta applications.
      Python
      •
      Other
      •4•8•7•7•Updated Apr 22, 2026Apr 22, 2026

    • binder

      Public
      Binder, tool for automatic generation of Python bindings
      pythonbindings
      pythonbindings
      C++
      •
      MIT License
      •70•364•38•9•Updated Apr 15, 2026Apr 15, 2026

    • RFdiffusion2

      Public
      Inference code for RFdiffusion2
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •69•437•9•3•Updated Apr 3, 2026Apr 3, 2026

    • RFDpoly

      Public
      A diffusion-based ML model for de novo design of DNA, RNA, proteins, and mixed assemblies.
      Python
      •
      Other
      •4•27•1•0•Updated Apr 2, 2026Apr 2, 2026

    • huggingface_datasets

      Public
      A repository to house and host the documentation and infrastructure for the datasets hosted on HuggingFace.
      Other
      •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • RFantibody

      Public
      Python
      •
      MIT License
      •164•514•77•10•Updated Mar 5, 2026Mar 5, 2026

    • PyRosetta.notebooks

      Public
      Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
      jupyter-notebookdnarosetta
      jupyter-notebookdnarosettarna-structure-predictionprotein-designprotein-foldingprotein-structure-predictiongoogle-colabpyrosettaprotein-docking
      Jupyter Notebook
      •
      MIT License
      •172•702•29•6•Updated Feb 27, 2026Feb 27, 2026

    • pyrosetta_colab_setup

      Public
      Files for our auxiliary pyrosetta_colab_setup PyPI package
      Python
      •
      MIT License
      •3•3•0•1•Updated Feb 10, 2026Feb 10, 2026

    • RFDiffusion2_all_the_code

      Public
      This is all of the code for RFDiffusion2. (i.e. git push from the IPD's current repo)
      Python
      •2•7•0•0•Updated Jan 27, 2026Jan 27, 2026

    • pyrosetta_scripts

      Public
      A place in which scripts developed in PyRosetta can be stored and shared. In the not too distant future, these scripts will be tested along side the main reposi…
      Scala
      •
      Other
      •8•9•1•2•Updated Nov 7, 2025Nov 7, 2025

    • rdkit

      Public
      The official sources for the RDKit library
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •1k•4•0•2•Updated Sep 24, 2025Sep 24, 2025

    • RFjoint2

      Public
      Code for running RFjoint2
      Python
      •
      Other
      •5•10•0•0•Updated Aug 27, 2025Aug 27, 2025

    • demos

      Public
      Demos of many Rosetta applications
      Roff
      •
      Other
      •4•25•1•2•Updated Jun 10, 2025Jun 10, 2025

    • chimerax-rosetta-server

      Public
      A ChimeraX server plugin to recieve data from Rosetta.
      Python
      •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • pybind11

      Public
      Seamless operability between C++11 and Python
      C++
      •
      Other
      •2.3k•9•0•4•Updated Dec 16, 2024Dec 16, 2024

    • privileged_residues

      Public
      Python
      •
      Other
      •4•2•0•19•Updated Dec 8, 2024Dec 8, 2024

    • protein_generator

      Public
      Joint sequence and structure generation with RoseTTAFold sequence space diffusion
      Python
      •
      MIT License
      •59•333•16•0•Updated Oct 28, 2024Oct 28, 2024

    • rosetta_clone_tools

      Public
      A public repository with scripts and tools for cloning and setting up RosettaCommons repositories.
      Shell
      •26•27•0•1•Updated Mar 8, 2024Mar 8, 2024

    • rosetta_scripts_scripts

      Public
      This is the repository where all developers writing protocols in XML should place all of their scripts
      Roff
      •
      Other
      •0•7•1•1•Updated Mar 7, 2024Mar 7, 2024
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