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@PBR Wageningen UR Plant Breeding

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    32 repositories

    • pbr-ro-crate

      Public
      Repository for PBR RO-crate metadata
      0•0•0•0•Updated Jan 28, 2026Jan 28, 2026

    • elixir-fondue-datathon

      Public
      ELIXIR FONDUE Datathon
      Jupyter Notebook
      •0•2•1•0•Updated Dec 5, 2024Dec 5, 2024

    • fitPoly

      Public
      Development repository of the R package fitPoly.
      R
      •1•2•0•0•Updated Aug 15, 2024Aug 15, 2024

    • FAIR_CxE

      Public
      Supporting information for the Manuscript: TITLE
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 5, 2023May 5, 2023

    • coreCollection

      Public
      coreCollection
      R
      •0•0•0•0•Updated Dec 20, 2022Dec 20, 2022

    • QTM

      Public
      QTLTableMiner++ tool for mining tables in scientific articles
      text-miningcandidate-genessolr
      text-miningcandidate-genessolrontologiesqtlscientific-articleseurope-pmc
      Java
      •
      Apache License 2.0
      •6•6•2•3•Updated May 20, 2022May 20, 2022

    • CoSSA

      Public
      Comparative Subsequence Sets Analysis (CoSSA) workflows to identify haplotype specific SNPs linked to a trait of interest from Whole Genome Sequencing data
      Shell
      •2•1•0•0•Updated Jan 13, 2022Jan 13, 2022

    • pedigreeSim

      Public
      PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of either diploid or tetr…
      Java
      •2•14•2•0•Updated Apr 13, 2021Apr 13, 2021

    • Pedimap

      Public
      Pedimap: software for the visualization of genetic and phenotypic data in pedigrees
      C++
      •2•5•0•0•Updated Feb 4, 2021Feb 4, 2021

    • PediHaplotyper

      Public
      PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees
      R
      •1•2•0•0•Updated Feb 2, 2021Feb 2, 2021

    • WatsonPotato

      Public
      Additional material for the article: Extracting knowledge networks from plant scientific literature: Potato tuber flesh color as an exemplary trait.
      knowledge-networks
      knowledge-networks
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 16, 2020Sep 16, 2020

    • Extracting_knowledge_networks_from_literature-Scripts_for_Watson_potato

      Public
      Scripts used for the work described in the manuscript
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 20, 2019Nov 20, 2019

    • QTL-prioritisation

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jun 28, 2019Jun 28, 2019

    • DeltaSNP

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 17, 2018Sep 17, 2018

    • MQ2_Web

      Public
      A simple web interface for MQ2 to process output from MapQTL analysis.
      Python
      •1•2•0•1•Updated Aug 10, 2018Aug 10, 2018

    • linked-data-demo

      Public
      JavaScript
      •
      MIT License
      •5•0•0•0•Updated Jan 11, 2018Jan 11, 2018

    • linked-data-demo_redirect

      Public
      The redirection layer for the linked-data-demo project for plants.
      Python
      •0•0•0•0•Updated Nov 21, 2017Nov 21, 2017

    • flowerpowerparrot

      Public
      script to download data of parrot flower power sensors using 'powerpot' API
      Python
      •0•0•1•0•Updated Mar 1, 2017Mar 1, 2017

    • GenesysParser

      Public
      Client to read and parse accession (MCPD passport) information from GENESYS.
      genetic-diversity
      genetic-diversity
      Python
      •0•0•0•0•Updated Nov 18, 2016Nov 18, 2016

    • ODEX-FAIRDataPoint

      Public
      Java
      •
      Apache License 2.0
      •14•0•0•0•Updated Jun 8, 2016Jun 8, 2016

    • jChebi2gene

      Public
      Java library to automatically link a chebi compound/identifier to a metabolic pathway or genes from the tomato genome.
      Java
      •0•3•0•0•Updated Nov 14, 2015Nov 14, 2015

    • scripts

      Public
      Random collection of scripts
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 19, 2015Oct 19, 2015

    • Marker2Sequence

      Public
      Explore QTL regions for candidate genes.
      JavaScript
      •1•2•0•0•Updated May 29, 2014May 29, 2014

    • SemGem

      Public
      Semantic genebank integration
      CSS
      •0•0•2•0•Updated May 29, 2014May 29, 2014

    • MQ2

      Public
      A simple python module to process output from MapQTL analysis.
      Python
      •
      GNU General Public License v3.0
      •3•2•0•0•Updated Jul 1, 2013Jul 1, 2013

    • gff2RDF

      Public
      Convert the genome annotation of some crops into RDF
      Java
      •
      Other
      •0•2•0•0•Updated Jun 27, 2013Jun 27, 2013

    • BreeDB-Lite

      Public
      BreeDB is a relational database which aims to support breeding for quantitative agronomical traits. The database can be explored through a web-based interface, …
      Other
      •1•2•0•0•Updated Feb 20, 2013Feb 20, 2013

    • path2gene

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Nov 15, 2012Nov 15, 2012

    • chebi2gene

      Public
      Python
      •
      Other
      •0•3•0•0•Updated Jul 16, 2012Jul 16, 2012

    • pbr.github.com

      Public
      Description Wageningen UR Plant Breeding github repository
      0•2•0•0•Updated Jun 13, 2012Jun 13, 2012
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