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7 repositories

HTT_detection
Public
Methods for detection of horizontal transfer of transposable elements from genome sequences. GPL version 3 license.
transposon
transposon
R
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GNU General Public License v3.0
•1•2•0•0•Updated Apr 19, 2022Apr 19, 2022
horizontalTransfer
Public
Code used to infer and filter horizontal transfer events in eukaryotes. GPL Version 3 license.
TeX
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GNU General Public License v3.0
•2•9•0•0•Updated Apr 18, 2022Apr 18, 2022
Tuatara-paper
Public
Contains the scripts used to analyse tuatara transposable elements, generate figures for tautara paper and infer phylogenies
Shell
•1•1•0•0•Updated May 28, 2020May 28, 2020
regionalGenomeTurnover
Public
Scripts that were used in "Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse"
R
•1•2•0•0•Updated May 3, 2019May 3, 2019
retrotransposonAccumulation
Public
R
•0•0•0•0•Updated Apr 16, 2017Apr 16, 2017
Elephant-project
Public
Contains the scripts used to convert BAM to BED, generate binary sequences and infer phylogenies.
C++
•1•0•0•0•Updated Apr 6, 2017Apr 6, 2017
L1-dynamics
Public
Sample code to accompany the L1 evolutionary dynamics across eukaryotes manuscript. Shows how to perform two independent extraction methods: iterative search us…
Shell
•2•3•0•0•Updated Nov 28, 2016Nov 28, 2016

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