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Parser for the jung2019 dataset#8
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DSuveges wants to merge 8 commits into
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Call the stand alone script as follows for testing:
python modules/jung2019_parser.py \ --jung_file ${v2g_data}/jung2019_pchic_tableS3.csv \ --gene_index ${v2g_data}/geneset.protein_coding.parquet \ --chain_file ${v2g_data}/grch37_to_grch38.over.chain \ --output_file jung2019_test-output.parquetThe modul is integrated into the main parser. This dataset introdulces a new column:
tissuesthat needs to be added to the other parsers as well to make sure they can be merged.