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63 workflow runs

63 workflow runs

changed the way that ch_sample is generated, shifted to much more sim… nf-core CI #63: Commit 3e675b2 pushed by number-25

2m 42s dev

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2m 42s

working on migration to 26.10 syntax, still broken - using nextflow l… nf-core CI #62: Commit 40bb8ad pushed by number-25

1m 24s dev

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1m 24s

changed isoquant configs, slowly modifying code so that it meets synt… nf-core CI #61: Commit 6240b80 pushed by number-25

1m 49s dev

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1m 49s

minor params tweaks, ch_transcriptome_fasta nf-core CI #60: Commit 9aeee39 pushed by number-25

2m 23s dev

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2m 23s

minor tweaks in schema nf-core CI #59: Commit fc5b1ba pushed by number-25

2m 15s dev

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2m 15s

removing uneeded config includes nf-core CI #58: Commit f7d734f pushed by number-25

3m 9s dev

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3m 9s

ngs_bits_build in bam_qc subworkflow nf-core CI #57: Commit 5bb2113 pushed by number-25

3m 49s dev

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3m 49s

fixing trace_timestamp wording, final charm.... nf-core CI #56: Commit 8b900e0 pushed by number-25

3m 52s dev

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3m 52s

fixing trace_timestamp wording nf-core CI #55: Commit 7b5d628 pushed by number-25

3m 21s dev

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3m 21s

replaced trace_timestamp function with https://github.com/nextflow-io… nf-core CI #54: Commit 0004fb1 pushed by number-25

3m 39s dev

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3m 39s

replaced trace_timestamp function with https://github.com/nextflow-io… nf-core CI #53: Commit 1a6cfb8 pushed by number-25

2m 54s dev

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2m 54s

removed check_max() function and replaced with resourceLimits directive nf-core CI #52: Commit 9de4be2 pushed by number-25

3m 3s dev

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3m 3s

Update ci.yml - from 24.10.0 to 25.10.10 NXF_VER nf-core CI #51: Commit 6501cee pushed by number-25

3m 16s dev

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3m 16s

added docs about which modules are skipped when mapping to transcript… nf-core CI #50: Commit ed67048 pushed by number-25

2m 31s dev

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2m 31s

finished all inputs testing, getting closer to master release, few mo… nf-core CI #49: Commit b0d7be1 pushed by number-25

3m 6s dev

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3m 6s

fixing up channel logic, doing more tests nf-core CI #48: Commit 0dd79b6 pushed by number-25

3m 4s dev

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3m 4s

workflow tweaks nf-core CI #47: Commit 4a1a1cd pushed by number-25

3m 8s dev

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3m 8s

appears that sylph-tax is functional, isoquant taking far too long on… nf-core CI #46: Commit 76779cc pushed by number-25

2m 58s dev

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2m 58s

toying more with sylph-tax, rejigging main workflow.nf nf-core CI #45: Commit 22c587b pushed by number-25

2m 21s dev

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2m 21s

testing bam input and mapping to transcriptome nf-core CI #44: Commit 7881bd6 pushed by number-25

3m 2s dev

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3m 2s

getting closer to testing sylph out, need to index unmapped bam and c… nf-core CI #43: Commit f9c5123 pushed by number-25

2m 51s dev

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2m 51s

adding in sylph profiling of unmapped reads, still much to do nf-core CI #42: Commit 92f5838 pushed by number-25

3m 23s dev

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3m 23s

fixing bam inputs nf-core CI #41: Commit 2006a41 pushed by number-25

3m 23s dev

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3m 23s

mapping to transcriptome tested on full size dataset, bam_input on fu… nf-core CI #40: Commit 83ecfc0 pushed by number-25

4m 13s dev

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4m 13s

successfully tested mapping to transcriptome on minmimal test dataset… nf-core CI #39: Commit 992461c pushed by number-25

2m 58s dev

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2m 58s