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FIX: Provide FD arguments to combined plot function in BOLD notebook#122

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nipreps:mainfrom
jhlegarreta:FixCombinedProfileCallInBOLDNotebook
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FIX: Provide FD arguments to combined plot function in BOLD notebook#122
jhlegarreta wants to merge 1 commit into
nipreps:mainfrom
jhlegarreta:FixCombinedProfileCallInBOLDNotebook

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@jhlegarreta

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Provide FD arguments to combined plot function in BOLD notebook.

Fixes:

File "/home/runner/work/nifreeze/nifreeze/docs/notebooks/bold_realignment.py", line 275, in main
    plot_combined_profile(
TypeError: main.<locals>.plot_combined_profile() missing 2 required positional arguments: 'afni_fd' and 'nifreeze_fd'

raised for example in:
https://github.com/nipreps/nifreeze/actions/runs/15007162520/job/42168515561?pr=117#step:14:2223

Take advantage of the commit to rename the function definition variables so that they do not shadow the outer variables.

Provide FD arguments to combined plot function in BOLD notebook.

Fixes:
```
File "/home/runner/work/nifreeze/nifreeze/docs/notebooks/bold_realignment.py", line 275, in main
    plot_combined_profile(
TypeError: main.<locals>.plot_combined_profile() missing 2 required positional arguments: 'afni_fd' and 'nifreeze_fd'
```

raised for example in:
https://github.com/nipreps/nifreeze/actions/runs/15007162520/job/42168515561?pr=117#step:14:2223

Take advantage of the commit to rename the function definition variables
so that they do not shadow the outer variables.
@jhlegarreta jhlegarreta force-pushed the FixCombinedProfileCallInBOLDNotebook branch from d3e2608 to b4e47b7 Compare May 14, 2025 02:46
@jhlegarreta jhlegarreta marked this pull request as draft May 14, 2025 02:59
Comment on lines +301 to +302
" afni_fd,\n",
" nifreeze_fd,\n",

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These are not ever calculated explicitly. It does look like some cell is gone.

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2 participants