Issues

• [WIP] Feature: Add nobrainer.qc module for brain MRI quality control

  neuronets/nobrainer#377 · Filter by author dhritimandas opened on Apr 14, 2026

• BIDS integration

  question
  neuronets/nobrainer#375 · Filter by author dhritimandas opened on Apr 9, 2026

• Add dataset validation contract (DataSpec) and nobrainer validate / nobrainer inspect CLI

  neuronets/nobrainer#374 · Filter by author dhritimandas opened on Apr 9, 2026

• Correct way to specify loss

  question
  neuronets/nobrainer#345 · Filter by author hvgazula opened on Jul 18, 2024

• Modifying guides and re-running checks isn't pulling in the latest code.

  question
  neuronets/nobrainer#344 · Filter by author hvgazula opened on Jul 18, 2024

• Rewrite metrics module with model subclassing

  neuronets/nobrainer#343 · Filter by author hvgazula opened on Jul 18, 2024
  1

  

• Filtering nonzero volumes in dataset conflicts with pgan training

  neuronets/nobrainer#339 · Filter by author hvgazula opened on Jun 19, 2024
  1

• Add filter to drop examples (blocks) which are uniform (all zeros)

  neuronets/nobrainer#336 · Filter by author hvgazula opened on Jun 7, 2024
  2

  

• Unable to restore custom metric when init_from_checkpoints is used

  bug
  neuronets/nobrainer#335 · Filter by author hvgazula opened on May 13, 2024

• Passing checkpoint related arguments from outside Segmentation

  neuronets/nobrainer#333 · Filter by author hvgazula opened on May 11, 2024

• Get checkpoint based on create time is probably not a good idea

  neuronets/nobrainer#331 · Filter by author hvgazula opened on May 10, 2024
  6

  

• refactor code to calculate records per shard using n_volumes and number of shards

  neuronets/nobrainer#328 · Filter by author hvgazula opened on Apr 20, 2024
  2

  

• Refactor code to identify correct steps per epoch

  bug
  neuronets/nobrainer#325 · Filter by author hvgazula opened on Apr 17, 2024
  1

  

• Add data count to tfrecords

  neuronets/nobrainer#321 · Filter by author hvgazula opened on Apr 10, 2024
  6

  

• map_labels fails for n_classes > 1

  bug
  neuronets/nobrainer#315 · Filter by author hvgazula opened on Apr 2, 2024 · 1.2.1
  1

  

• explicit repeat of dataset before calling fit method

  bug
  neuronets/nobrainer#314 · Filter by author hvgazula opened on Apr 1, 2024 · 1.2.1
  2

  

• suggested refactoring to avoid OOM errors

  neuronets/nobrainer#313 · Filter by author hvgazula opened on Apr 1, 2024 · 1.2.1
  1

  

• Redundancy in serializing shapes of feature and label volumes

  neuronets/nobrainer#312 · Filter by author hvgazula opened on Mar 31, 2024 · 1.2.1

• Could this have been a typo?

  neuronets/nobrainer#311 · Filter by author hvgazula opened on Mar 31, 2024 · 1.2.1

• Remove redundant method

  neuronets/nobrainer#310 · Filter by author hvgazula opened on Mar 23, 2024 · 1.2.1
  

• Fix PGAN issues

  neuronets/nobrainer#308 · Filter by author hvgazula opened on Mar 23, 2024 · 1.2.1
  7

  

• Add test_unetr() in model_tests.py

  wontfix
  neuronets/nobrainer#301 · Filter by author hvgazula opened on Mar 20, 2024
  1

  

• Extend model tests to n_classes > 1 and channels > 1

  neuronets/nobrainer#298 · Filter by author hvgazula opened on Mar 18, 2024

• Retraining kwyk model (bayesian neural network) on kwyk dataset using nobrainer API

  neuronets/nobrainer#293 · Filter by author hvgazula opened on Mar 12, 2024
  1

  

• Refactor unet.py to remove hard-coded elements

  enhancement
  neuronets/nobrainer#280 · Filter by author hvgazula opened on Mar 5, 2024
  2