Issues

• descrepancy in predicted variant count from two different versions of Mtoolbox

  mitoNGS/MToolBox#115 · Filter by author dasn588 opened on Aug 28, 2025

• cat: test.lst: No such file or directory

  mitoNGS/MToolBox#114 · Filter by author StavroulaPetr opened on Jun 5, 2024

• "No module named pandas" although pandas installed

  mitoNGS/MToolBox#111 · Filter by author bengisukb opened on Oct 5, 2023

• .py files "command not found"

  mitoNGS/MToolBox#110 · Filter by author SamiaPT opened on Sep 20, 2023

• How to compliance with hg38 reference panel

  mitoNGS/MToolBox#109 · Filter by author Pilibeibei opened on Jul 25, 2022

• Do you have an mtoolbox docker container publically available?

  mitoNGS/MToolBox#107 · Filter by author ulloaa opened on Mar 14, 2022
  5

• re-mapped the variant to the rCRS reference sequence

  mitoNGS/MToolBox#105 · Filter by author WZo0o opened on Dec 19, 2021

• no vcf file after completing mtoolbox.sh

  mitoNGS/MToolBox#104 · Filter by author Pilibeibei opened on Aug 25, 2021
  2

• no *annotation.csv after using variants_functional_annotation.py

  mitoNGS/MToolBox#103 · Filter by author Pilibeibei opened on Aug 13, 2021

• HGVS named method in annotation.csv

  mitoNGS/MToolBox#100 · Filter by author choumeijiao opened on Jul 27, 2021

• Install MToolbox samtools error

  mitoNGS/MToolBox#98 · Filter by author Phillip-a-richmond opened on Apr 9, 2021
  1

• Out of memory error

  mitoNGS/MToolBox#97 · Filter by author halimaalachram opened on Mar 16, 2021

• Unable to compute haplogroup. Exit - No annotation.csv found. Exit

  mitoNGS/MToolBox#96 · Filter by author moldach opened on Feb 10, 2021

• Can't generate VCF output

  mitoNGS/MToolBox#95 · Filter by author simm2006 opened on Jan 15, 2021
  3

• Cant install MToolBox, it cant find setup.sh after setting the PATH

  mitoNGS/MToolBox#93 · Filter by author flight7777 opened on Mar 17, 2020

• Is there any gold standard variant calls for mitochondria?

  mitoNGS/MToolBox#92 · Filter by author mtorralvo opened on Feb 27, 2020
  1

• RCRS vs RSRS output

  mitoNGS/MToolBox#90 · Filter by author sremuk opened on Jan 28, 2020
  2

• Issue with check_files.py during installation

  mitoNGS/MToolBox#87 · Filter by author robertopreste opened on Jan 10, 2020
  3

• No such file or directory: 'VCF_dict_tmp'

  mitoNGS/MToolBox#86 · Filter by author PengZhangJHU opened on Nov 13, 2019
  2

• vcfoutput bug

  mitoNGS/MToolBox#85 · Filter by author Pilibeibei opened on Sep 27, 2019
  7

• Unable to compute haplogroup when using RCRS

  wontfix
  mitoNGS/MToolBox#83 · Filter by author Pilibeibei opened on Aug 5, 2019
  2

• Unable to compute haplogroup

  help wanted
  mitoNGS/MToolBox#82 · Filter by author Ssocarrat opened on Jul 31, 2019
  3

• My VCF contains virtually no 1/1 genotypes

  mitoNGS/MToolBox#80 · Filter by author mocksu opened on Jul 16, 2019
  1

  

• Switched HF in high depth samples

  bug
  mitoNGS/MToolBox#79 · Filter by author jalwillcox opened on Jun 20, 2019
  2

  

• .fastq files stay uncompressed for a long time if input is bam

  enhancement
  mitoNGS/MToolBox#78 · Filter by author dwuab opened on Mar 20, 2019
  2