Skip to content

Add "unknown" features to output of importMetaphlan#743

Merged
TuomasBorman merged 6 commits into
develfrom
importMetaphlan
Jul 18, 2025
Merged

Add "unknown" features to output of importMetaphlan#743
TuomasBorman merged 6 commits into
develfrom
importMetaphlan

Conversation

@TuomasBorman

Copy link
Copy Markdown
Contributor

importMetaphlan imported only features with a known rank. However, sometimes Metaphlan do not detect a feature but just returns "UNKNOWN" (i.e., it does not have any rank). These features were dropped from the outputted TreeSE object.

This PR modifies the function so that the object includes also the unknown features.

@TuomasBorman TuomasBorman mentioned this pull request Jun 17, 2025
@TuomasBorman
TuomasBorman merged commit 2f32306 into devel Jul 18, 2025
1 of 3 checks passed
@TuomasBorman
TuomasBorman deleted the importMetaphlan branch July 18, 2025 07:10
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant