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Evaluate how best to report if there is evidence of chimera (consensus hitting to 2 distant organisms)

enhancementNew feature or requestNew feature or request

Status: Open.

#45 In maelyg/ont_amplicon;

· maelyg opened on Jun 18, 2025

Is there a way to track pipeline version tag in nextflow logs

questionFurther information is requestedFurther information is requested

Status: Open.

#44 In maelyg/ont_amplicon;

· maelyg opened on Jun 18, 2025

Assess whether we can set default chopper and rattle settings for very short amplicons (e.g. 100 bp)

enhancementNew feature or requestNew feature or request

Status: Open.

#43 In maelyg/ont_amplicon;

· maelyg opened on Jun 17, 2025

Search for the presence of internal primers in consensus to detect chimeric sequences

enhancementNew feature or requestNew feature or request

Status: Open.

#41 In maelyg/ont_amplicon;

· maelyg opened on Jun 11, 2025

Report ORF length of each consensus for amplicon targetting protein coding genes (ie CO1)

enhancementNew feature or requestNew feature or request

Status: Open.

#37 In maelyg/ont_amplicon;

· neoformit opened on Jun 11, 2025

Assess the value of incorporating a flag that reports detection of primers

enhancementNew feature or requestNew feature or request

Status: Open.

#36 In maelyg/ont_amplicon;

· maelyg opened on Jun 10, 2025

Evaluate if pipeline can be repeated automatically with more relaxed parameters if clustering step fails

enhancementNew feature or requestNew feature or request

Status: Open.

#32 In maelyg/ont_amplicon;

· maelyg opened on Jun 9, 2025

incorporate contamination flag

enhancementNew feature or requestNew feature or request

Status: Open.

#19 In maelyg/ont_amplicon;

· maelyg opened on Apr 24, 2025