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lijo8146/README.md

Lilly Jones, PhD

Instructor · Environmental Hazards Modeler · Geospatial Data Scientist
CIRES Earth and ESIIL Labs · University of Colorado Boulder

LinkedIn Daear Consulting

About

I am a hydrogeologist and environmental hazards modeler working at CIRES Earth and ESIIL Labs at the University of Colorado Boulder. As part of the Education Team, I am one of the instructors for our Graduate Earth Data Science Certificate program, ESIIL Stars, and the Data Short Course. I also participate in the many Hackathons we offer throughout the year. My work focuses on predictive modeling, hydrogeologic analysis, and geospatial data science. I build reproducible computational pipelines that translate environmental complexity into actionable models.

Current CIRES-funded research includes Shadow Ecology - a deep learning method I'm developing to investigate whether model residuals can be leveraged to improve predictions in data- and sensor-poor regions.

I am also the co-owner and primary data scientist of Daear Consulting, LLC, currently partnering with Oglala Lakota College on a USDA-NIFA funded grant to build hydrologic and agricultural data cubes for analysis, teaching, and Tribal data sovereignty workflows.

As a Tribal college graduate and former Tribal college faculty member at Oglala Lakota College, I am committed to sovereignty-aligned workflows and reproducible science that centers Tribal partners in environmental research.

Research Focus

  • Hydrogeologic and Earth systems modeling
  • Fire–vegetation predictive modeling
  • Multispectral remote sensing integration
  • Geospatial structure in model residuals
  • Geospatial data engineering & data cubes
  • Environmental hazard risk modeling
  • Reproducible computational workflows
  • Tribal Data Science
  • Tribal Data Sovereignty

Games

I created a series exploring common gaming algorithms and systems design concepts here: Systems at Play

Tools & Stack

Languages & Environments
Python R C Bash Jupyter VSCode Fortran

Geospatial
GDAL/OGR rasterio geopandas shapely fiona earthpy ArcGIS QGIS

Data & Compute
xarray zarr Dask pandas numpy

Cloud & Data Access
CyVerse STAC VSI/VSICURL earthaccess Planetary Computer Docker HPC/SLURM

Modeling & Analysis
scikit-learn scipy statsmodels

Visualization
matplotlib hvplot folium seaborn

Remote Sensing & Data Sources
Landsat Sentinel-2 MODIS NLCD EMIT Hyperspectral SSURGO NHD NWIS NOAA 3DEP/lidar

Version Control
Git GitHub

Leadership & Service

Role Description
Instructor Earth Data Science Graduate Certificate courses, ESIIL Stars, Data Short Course CU Boulder
Principal Investigator Shadow Ecology: Model Residuals as Signal, CIRES, CU Boulder
Owner / Data Scientist Daear Consulting, LLC USDA-NIFA grant with Oglala Lakota College
Participant American Geophysical Union Voices in Science
Former Faculty Oglala Lakota College

Education

PhD, Geology and Geological Engineering · 2021
South Dakota School of Mines and Technology

BS, Interdisciplinary Earth and Environmental Sciences · 2013
Oglala Lakota College

If you're looking for my "old" GitHub, find it here Yawapi

Pinned Loading

  1. scientists_who_code_demo_repo scientists_who_code_demo_repo Public

    Demo repository for “Scientists Who Code”, a model project showing how interdisciplinary teams (including researchers, students, and Tribal community members without formal programming training) ca…

  2. Spectral_library.ipynb Spectral_library.ipynb Public

    Read ECOSTRESS spectral library files

    Jupyter Notebook

  3. earthlab-education/Earth-Analytics-AY25 earthlab-education/Earth-Analytics-AY25 Public

    repo for EDA 2025-2026

    3

  4. systems_at_play systems_at_play Public

    Systems at Play explores games, puzzles, simulations, and emergent behavior through code.

    Jupyter Notebook