GitHub - hypotheses/Genetics: R & Shell scripts to facilitate analysis of family-based genetic data

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Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
impute2		impute2
00LICENSE		00LICENSE
01README.md		01README.md
GWAF_geepack.quant.batch.R		GWAF_geepack.quant.batch.R
GWAF_lmepack.batch.R		GWAF_lmepack.batch.R
HEADER		HEADER
QIC_tiled.R		QIC_tiled.R
README.docx		README.docx
Reference_Graphics_Options.R		Reference_Graphics_Options.R
SelectGene.sh		SelectGene.sh
Summary.Phenotype.R		Summary.Phenotype.R
TRAP_qvalues.r		TRAP_qvalues.r
backup.sh		backup.sh
batch.lmekin.R		batch.lmekin.R
bfast_genome_index.sh		bfast_genome_index.sh
bfast_matched_local_align.sh		bfast_matched_local_align.sh
clopidogrel_resistance_interaction.R		clopidogrel_resistance_interaction.R
combinedResult.sh		combinedResult.sh
compar.gee.R		compar.gee.R
convert_prob2dose2.sh		convert_prob2dose2.sh
cordellsTest.R		cordellsTest.R
correlatedMVN.R		correlatedMVN.R
fastEpistasis.R		fastEpistasis.R
genotype2allele.R		genotype2allele.R
gg.forest.R		gg.forest.R
gwas.GeeLogit.R		gwas.GeeLogit.R
gwasGEE.R		gwasGEE.R
gwasplot.R		gwasplot.R
lambda.gc.R		lambda.gc.R
lamp.lmekin.R		lamp.lmekin.R
lmekinLamp.R		lmekinLamp.R
lmekinLamp2.R		lmekinLamp2.R
mach.coxme.R		mach.coxme.R
makeFamily.R		makeFamily.R
marker_distribution.R		marker_distribution.R
mht.plot.R		mht.plot.R
mhtplot.v072011.R		mhtplot.v072011.R
my.lme.batch.R		my.lme.batch.R
network.R		network.R
pairwiselist2matrix.r		pairwiselist2matrix.r
parallel.add.R		parallel.add.R
plink2merlin.r		plink2merlin.r
plot.pedigree.R		plot.pedigree.R
plotPedigree.pdf		plotPedigree.pdf
prob2dose.pl		prob2dose.pl
prob2dose.sh		prob2dose.sh
qqgwas.R		qqgwas.R
rankit.R		rankit.R
read.merlin.r		read.merlin.r
read.mldose.r		read.mldose.r
read.plink.r		read.plink.r
readLamp.R		readLamp.R
readpedigree.R		readpedigree.R
recodeA.R		recodeA.R
recodeA.freq.R		recodeA.freq.R
simSNP.R		simSNP.R
splitPedigree.r		splitPedigree.r
transposeR.R		transposeR.R
wordpress_install.sh		wordpress_install.sh
write.merlin.r		write.merlin.r