Oneoligo Project

Usage:

These parameters are just an example. In general, they depend on the dataset used.

mkdir build

make build PARAMS="-DDEF_NUM_STR=5 -DDEF_NUM_HASH=7 -DDEF_NUM_BITS=12 -DDEF_NUM_CHAR=4 -DDEF_K_INPUT=6 -DDEF_SHIFT=6"

./onejoin --read dataset_name --device 0 --samplingrange 5000 --countfilter 1 --batch_size 10000

Update constants:

make update PARAMS="-DDEF_NUM_STR=5 -DDEF_NUM_HASH=7 -DDEF_NUM_BITS=12 -DDEF_NUM_CHAR=4 -DDEF_K_INPUT=6 -DDEF_SHIFT=6"

Simple test:

mkdir build
make -j
make test-join
make test-cluster

Other links

Intel article: Enable DNA Storage on Heterogeneous Architectures with oneAPI
DevMesh project