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20 changes: 17 additions & 3 deletions weather_sp/splitter_pipeline/file_splitters.py
Original file line number Diff line number Diff line change
Expand Up @@ -207,7 +207,7 @@ def split_data(self) -> None:
grib_copy_cmd = shutil.which('grib_copy')
grib_get_cmd = shutil.which('grib_get')
uniq_cmd = shutil.which('uniq')
for cmd, name in [(grib_get_cmd, 'grib_copy'), (grib_get_cmd, 'grib_get'), (uniq_cmd, 'uniq')]:
for cmd, name in [(grib_copy_cmd, 'grib_copy'), (grib_get_cmd, 'grib_get'), (uniq_cmd, 'uniq')]:
if not cmd:
raise EnvironmentError(f'binary {name!r} is not available in the current environment!')

Expand Down Expand Up @@ -235,17 +235,31 @@ def split_data(self) -> None:
grib_get_args = [grib_get_cmd, '-p', split_dims_arg, local_file.name]
grib_get_process = subprocess.Popen(grib_get_args, stdout=subprocess.PIPE)
uniq_output = subprocess.check_output((uniq_cmd,), stdin=grib_get_process.stdout)

# Filter out empty strings that might result from trailing newlines.
decoded_text = uniq_output.decode('utf-8').strip()
if not decoded_text:
self.logger.warning(
'No GRIB messages in %r matched the filter expression: %r. Skipping...',
self.input_path, self.grib_filter_expression
)
metrics.Metrics.counter('file_splitters', 'skipped_empty_filter').inc()
metrics.Metrics.counter('file_splitters', 'total_skipped').inc()
return

decoded_uniq = decoded_text.splitlines()

output_paths = []
skipped_paths = []
for line in uniq_output.decode('utf-8').rstrip('\n').split('\n'):
for line in decoded_uniq:
splits = dict(zip(split_dims, line.split(' ')))
output_path = self.output_info.formatted_output_path(splits)
if self.should_skip_file(output_path):
skipped_paths.append(output_path)
continue
output_paths.append(output_path)
if not output_paths:
metrics.Metrics.counter('file_splitters', 'skipped').inc()
metrics.Metrics.counter('file_splitters', 'total_skipped').inc()
self.logger.info('Skipping %s, file already split into: %s',
repr(self.input_path), ', '.join(skipped_paths))
return
Expand Down
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