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feat: add experimental insect hosts #76

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feat: add experimental insect hosts #76

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15 changes: 12 additions & 3 deletions src/factorforge/cli/main.py
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,12 @@
from factorforge.engines.registry import EngineRegistry
from factorforge.engines.profile.utils import parse_fasta_records

HOST_MAP = {"nbenthamiana": "nbenthamiana", "by2": "ntabacum"}
HOST_MAP = {
"nbenthamiana": "nbenthamiana",
"by2": "ntabacum",
"sf9": "spodoptera_frugiperda",
"tni": "trichoplusia_ni",
}


def _configure_stdio() -> None:
Expand Down Expand Up @@ -154,8 +159,12 @@ def list_engines():
@click.option(
"--host",
default="nbenthamiana",
type=click.Choice(["nbenthamiana", "by2"], case_sensitive=False),
help="Expression host: nbenthamiana (default) or by2 (Tobacco BY-2 / N. tabacum)",
type=click.Choice(["nbenthamiana", "by2", "sf9", "tni"], case_sensitive=False),
help=(
"Expression host: nbenthamiana (default), by2 (N. tabacum), "
"sf9 (S. frugiperda / Sf9), tni (T. ni / High Five). "
"Insect hosts (sf9, tni) are experimental with placeholder codon tables."
),
)
@click.option("--profile", "-p", default="balanced", help="Optimization profile")
@click.option(
Expand Down
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