Issues

• Why do not return shrunken dispersion as the ultimate overdispersion?

  const-ae/glmGamPoi#76 · Filter by author Truongphi20 opened on Jun 20, 2026

• Question regarding the role of xim in overdispersion theta estimation

  const-ae/glmGamPoi#75 · Filter by author Truongphi20 opened on Jun 20, 2026

• Potential discrepancy in second derivative of log-likelihood (Hessian) for overdispersion parameter \theta in overdispersion.cpp

  const-ae/glmGamPoi#74 · Filter by author Truongphi20 opened on Jun 15, 2026

• Question regarding the difference of running glmGamPoi on a subset of data or on the whole data.

  const-ae/glmGamPoi#72 · Filter by author MarianoRuzJurado opened on May 28, 2026

• NaNs in standard errors of LFC

  const-ae/glmGamPoi#69 · Filter by author emdann opened on Apr 3, 2025
  1

• [FR] Implement logLik.glmGamPoi

  const-ae/glmGamPoi#58 · Filter by author jan-glx opened on Jan 16, 2024
  2

• HDF5Array is not available for package glmGamPoi

  const-ae/glmGamPoi#54 · Filter by author nlubock opened on Oct 5, 2023
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• Standard error of the overdispersion estimates

  const-ae/glmGamPoi#50 · Filter by author anglixue opened on May 6, 2023
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• compilation error

  const-ae/glmGamPoi#49 · Filter by author Jiayi-Wang-Joey opened on Mar 24, 2023
  2

• Compatibility with R 3

  const-ae/glmGamPoi#48 · Filter by author PedroMilanezAlmeida opened on Feb 28, 2023
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• Error in handle_design_parameter(design, data, col_data, reference_level) : Too few replicates / too many coefficients to fit model.

  const-ae/glmGamPoi#42 · Filter by author sopenaml opened on Dec 13, 2022
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• glmGamPoi scales cubically with the number of design matrix columns

  const-ae/glmGamPoi#41 · Filter by author frederikziebell opened on Nov 28, 2022
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• compare multiple pairs concurrently

  const-ae/glmGamPoi#40 · Filter by author pchiang5 opened on Nov 15, 2022
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• Error in pseudobulk step

  const-ae/glmGamPoi#39 · Filter by author darcymi opened on Nov 4, 2022
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• Can't install the package on MacOS Monterey

  const-ae/glmGamPoi#37 · Filter by author sjwu571 opened on Aug 11, 2022
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• Core Usage

  const-ae/glmGamPoi#36 · Filter by author NKalavros opened on Jul 27, 2022
  1

• Too many DEGs?

  const-ae/glmGamPoi#35 · Filter by author KunFang93 opened on Jun 21, 2022
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• test_de failing with on_disk models

  const-ae/glmGamPoi#33 · Filter by author NathanSiemers opened on Mar 30, 2022
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• determining the less trustworthy log2fc values

  const-ae/glmGamPoi#27 · Filter by author ceesu opened on Jul 30, 2021
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• pseudobulk_by apparently dropping columns

  const-ae/glmGamPoi#23 · Filter by author malcook opened on May 23, 2021
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• Use for pseudobulk differential expression - advantages & logFC values

  const-ae/glmGamPoi#22 · Filter by author Al-Murphy opened on May 10, 2021
  1

• Tests fail on i386 (really i686): ailure: qres.gampoi can handle other weird values (@test-residuals.R#112) a is not strictly more than b. Difference: 0

  const-ae/glmGamPoi#15 · Filter by author mr-c opened on Jan 16, 2021
  3