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[OPIK-7159][OPIK-7029] [BE][FE][SDK] revert: back out premature merge of #7428#7509

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[OPIK-7159][OPIK-7029] [BE][FE][SDK] revert: back out premature merge of #7428#7509
awkoy wants to merge 2 commits into
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awkoy/revert-7428-opik-7159

ci: make migration prefix check ignore deleted files (--diff-filter=A)

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