laser-cohorts

MPM/compartmental spatial, infectious disease models based on laser-core

Development setup

• install uv in the system Python directly with pip (below) or as Astral recommends

python3 -m pip install uv

• create and activate a virtual environment for local development and excution
  • you may choose any supported Python version >= 3.10

uv venv --python 3.13 .venv
source .venv/bin/activate # MacOS and Linux
# .venv/bin/activate.bat # Windows

• install laser-cohorts locally in development mode

uv pip install -e ".[dev]"

• install tox and tox-uv for running checks and tests

uv tool install tox --with tox-uv

or run tox directly with uvx:

uvx --with tox-uv tox

Documentation

Initial documentation here