Simulate benchmark data and perform inference using mt-SCITE, SCITE and Merlin using the snakemake workflow under workflow.
The simulation code can be found in ./src/simulation.
The functions that choose an error rate given the results of the k-fold cross validation procedure are available under ./src/learn_error_rates/
Under ./software, I stored the working versions of mt-SCITE, SCITE and Merlin.
To produce the figures of the method comparison, use the script ./src/method_comparison/marimo-plot-method-comparion.py