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Add optional Read online beside AlphaFold Nature cite
#587euwyngoh opened Sep 15, 2026
Fix multimer interface residue detection
#586Tanokri02 opened Aug 10, 2026
feat: integrate strux-rs for high-performance MSA preprocessing
#583QntmSeer opened Jun 21, 2026
Fix SoloSeq embedding truncation behavior
#580samanyuckulkarni123 opened Jun 8, 2026
Expose mmseqs --db-load-mode in precompute_alignments_mmseqs.py
#579XunOuyang opened Jun 7, 2026
Fix incorrect atom ordering in Protein.atom_positions comment (N, CA, C)
#578XunOuyang opened Jun 4, 2026
Fix script_utils invalid regex escape warning
#577taivu1998 opened May 10, 2026
Fix duplicate-sequence multimer mmCIF chain coordinates
#576taivu1998 opened May 10, 2026
Fix batched multimer template embedding shapes
#575taivu1998 opened May 10, 2026
Fix template offload helpers for long-sequence inference
#574taivu1998 opened May 10, 2026
Fix batched supervised chi periodicity loss
#573taivu1998 opened May 10, 2026
Fix per-example loss scaling for mixed-length batches
#572taivu1998 opened May 10, 2026
Fix chain center-of-mass loss weighting
#571taivu1998 opened May 10, 2026
Remove unused atom14 default-frame gather
#570taivu1998 opened May 10, 2026
Bump actions/checkout from 5 to 6
#558dependabot[bot] opened Nov 20, 2025Bot
Bump actions/setup-python from 5 to 6
#552dependabot[bot] opened Sep 4, 2025Bot
Explicitly set reentrant to False for torch checkpointing
#528an1lam opened Mar 31, 2025
1
Feat/cyclic offset
#526ioannisa92 opened Mar 22, 2025
2
Update PDB download link
#507davidsimon opened Nov 18, 2024
fix: set numpy and deepspeed dependency versions
#503etowahadams opened Nov 13, 2024Contributor
2
Update run_pretrained_openfold.py
#493Lix1993 opened Oct 12, 2024
fix typo in config.py
#487Lix1993 opened Sep 14, 2024
Bug Fix: Preserve full FASTA ID in alignment directory parsing to prevent truncation errors
#485juliocesar-io opened Sep 7, 2024
OpenFold Local Jupyter Notebook 📔 | Metrics, Plots, Concurrent Inference
#484juliocesar-io opened Aug 28, 2024
Fix for docs on deepspeed inference
#482josemduarte opened Aug 26, 2024Collaborator
3

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Add optional Read online beside AlphaFold Nature cite

Fix multimer interface residue detection

feat: integrate strux-rs for high-performance MSA preprocessing

Fix SoloSeq embedding truncation behavior

Expose mmseqs --db-load-mode in precompute_alignments_mmseqs.py

Fix incorrect atom ordering in Protein.atom_positions comment (N, CA, C)

Fix script_utils invalid regex escape warning

Fix duplicate-sequence multimer mmCIF chain coordinates

Fix batched multimer template embedding shapes

Fix template offload helpers for long-sequence inference

Fix batched supervised chi periodicity loss

Fix per-example loss scaling for mixed-length batches

Fix chain center-of-mass loss weighting

Remove unused atom14 default-frame gather

Bump actions/checkout from 5 to 6

Bump actions/setup-python from 5 to 6

Explicitly set reentrant to `False` for torch checkpointing

Feat/cyclic offset

Update PDB download link

fix: set numpy and deepspeed dependency versions

Update run_pretrained_openfold.py

fix typo in config.py

Bug Fix: Preserve full FASTA ID in alignment directory parsing to prevent truncation errors

OpenFold Local Jupyter Notebook 📔 | Metrics, Plots, Concurrent Inference

Fix for docs on deepspeed inference

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